SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59518

Length: 392 nt

UniGene Fasta

>sp_v3.0_unigene59518
ATGGGAGATTTGCCAGGCCTTGTAGAGATGTATTTGAATAAGACGCTTGAACTGGATAAATTTATTACATATGAGGTTTCTTTTGCGGAGATCAACAAGGCATTTGATTACATGATTAAAGGAGAGGGTTTGAGAACTGTGATTAAAGTGACTGAGTAAATGTTCAAGAGGATGCCATGAATTTTGACCTTAGAATAGTGAAAAGTCTGATACATTGGAAAGGAAGCCAGAAGTTTTGAGCTTAGAATTAGTGAAAAGTCTGATACATTGGAAAGTGTTAATAGGAAGCCAGAAGTTTTGAGCTTAGAATTAGTGAAAAGTATGATACATTGGAAAGTGTTAATGGTTATCTATTGGATAAAGATTTGTTCTCATAGATTAGGACACTTTGT

Ace file of the UniGene sp_v3.0_unigene59518

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase (Fragment) n=2 Tax=Pinaceae RepID=Q43025_PINBN	-	-	2.0e-16	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Alcohol dehydrogenase	-	-	1.956e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alcohol dehydrogenase.	EC:1.1.1.1	-	8.96831e-43	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		8.96831e-43	%
Sma3	Fatty acid metabolism	00071		8.96831e-43	%
Sma3	Glycine, serine and threonine metabolism	00260		8.96831e-43	%
Sma3	Tyrosine metabolism	00350		8.96831e-43	%
Sma3	Chloroalkane and chloroalkene degradation	00625		8.96831e-43	%
Sma3	Naphthalene degradation	00626		8.96831e-43	%
Sma3	Retinol metabolism	00830		8.96831e-43	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		8.96831e-43	%
Sma3	Drug metabolism - cytochrome P450	00982		8.96831e-43	%
Sma3	Metabolic pathways	01100		8.96831e-43	%
Sma3	Biosynthesis of secondary metabolites	01110		8.96831e-43	%
Sma3	S-(hydroxymethyl)glutathione dehydrogenase.	EC:1.1.1.284	-	9.17e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Methane metabolism	00680		9.17e-06	%

Source	Gene names
Sma3	ADH; ADH1; ADH2; ADH3; ADH6; ADH7; Adh; Adh1; Adh2; Adh2d; Adh3; AdhC1; AdhC2; AdhC3; AdhC4; AdhC5; AdhC6; AdhC7; At1g77120; F22K20.19; GSVIVT00014300001; GSVIVT00034830001; GSVIVT00034832001; GSVIVT00034833001; GSVIVT00034834001; GV-ADH1; LOC_Os11g10520;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	alcohol dehydrogenase (NAD) activity	GO:0004022	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to hypoxia	GO:0001666	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G77120.1	ADH1, ADH, ATADH, ATADH1 alcohol dehydrogenase 1 chr1:28975509-28977216 FORWARD LENGTH=379	2.0e-15	67%
RefSeq	Arabidopsis thaliana	NP_177837.1	alcohol dehydrogenase class-P [Arabidopsis thaliana]	3.0e-15	67%
RefSeq	Populus trichocarpa	XP_002328463.1	predicted protein, partial [Populus trichocarpa]	7.0e-17	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR7

Fln msg: your sequence is shorter than subject: 53 - 464

Fln protein: MGDLPGLVEMYLNKTLELDKFITYEVSFAEINKAFDYMIKGEGLRTVIKVTE*

Protein Length: 54

Fln nts: ATGGGAGATTTGCCAGGCCTTGTAGAGATGTATTTGAATAAGACGCTTGAACTGGATAAATTTATTACATATGAGGTTTCTTTTGCGGAGATCAACAAGGCATTTGATTACATGATTAAAGGAGAGGGTTTGAGAACTGTGATTAAAGTGACTGAGTAA___ATGTTCAAGAGGATGCCATGAATTTTGACCTTAGAATAGTGAAAAGTCTGATACATTGGAAAGGAAGCCAGAAGTTTTGAGCTTAGAATTAGTGAAAAGTCTGATACATTGGAAAGTGTTAATAGGAAGCCAGAAGTTTTGAGCTTAGAATTAGTGAAAAGTATGATACATTGGAAAGTGTTAATGGTTATCTATTGGATAAAGATTTGTTCTCATAGATTAGGACACTTTGT

Fln Alignment:

F7QVD2L01A14EM___DLPGLVEMYLNKTLELDKFITYEVSFAEINKAFDYMIKGEGLRTVIKVTE
A9NWR7_______________DLPGLVEMYLNKELELDKFITHEVSFADINKAFDYMIKGESLRTVIKVSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain