SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59508

Length: 198 nt

UniGene Fasta

>sp_v3.0_unigene59508
ATGGGGATTGTTTGAGCAACCTTTCAGATCTTGTCAATATTTTGTTCCAATGTCCAGTCTAGGGAGTATCTCGTCACAAGAGCAAATATCAAGGTTTATTTCTTGCATTCAAGAAGAAATTGAAGCAGTTAAATTGGACAAACATCTAACGCTCCTTGTTTTATGCGAGATCGGTAAAATCTTGCAGTTTCCAGTAGA

Ace file of the UniGene sp_v3.0_unigene59508

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Golgi transport complex-related protein [Arabidopsis thaliana] gb\|AAG52007.1\|AC012563_17 putative golgi transport complex protein; 67058-70172 [Arabidopsis thaliana] gb\|AEE34723.1\| Golgi transport complex-related protein [Arabidopsis thaliana]	-	-	2.0e-07	67%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	69%

Source	Gene names
Sma3	At1g67930; GSVIVT00018882001; POPTRDRAFT_551234; POPTRDRAFT_714877; RCOM_0696570; T23K23.22; VITISV_033618;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302138.1	predicted protein [Populus trichocarpa]	2.0e-13	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GT22

Fln msg: Distance to subject end: 308 aas, your sequence is shorter than subject: 65 - 844

Fln protein: WGLFEQPFRSCQYFVPMSSLGSISSQEQISRFISCIQEEIEAVKLDKHLTLLVLCEIGKILQFPV

Protein Length: 66

Fln nts: ATGGGGATTGTTTGAGCAACCTTTCAGATCTTGTCAATATTTTGTTCCAATGTCCAGTCTAGGGAGTATCTCGTCACAAGAGCAAATATCAAGGTTTATTTCTTGCATTCAAGAAGAAATTGAAGCAGTTAAATTGGACAAACATCTAACGCTCCTTGTTTTATGCGAGATCGGTAAAATCTTGCAGTTTCCAGTAGA

Fln Alignment:

F7QVD2L01EN3QR___PMSSLGSISSQEQISRFISCIQEEIEAVKLDKHLTLLVLCEIGKIL
B9GT22_______________PVSSRGSVPSKEQVSRILSRIQEEVEAVQLDGHLTLLVLREIGKVL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain