SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59433

Length: 252 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene59433
CTGAAGTTTAATAATGGTTTGGCAGTTAATAATCTACCTCGTCCTCCTCCCCTGTGTTTTTCATGTCGTCCAGGGGAGCCCGCAGGGCGAGCCCGTGAGATGCTCAGACACAACAGGCTTAACAAACTGCACAGTCTCTAATGCCTACGGGATGTTCCCGGATCGAATCCCCTGCAGGGCTGCTTCTGCTCTGTTTCCTTCCAATGAACAAGAAGTGATGCAGGCCGTTGCCATGGCGACTCGGAGGAAGCA

Ace file of the UniGene sp_v3.0_unigene59433 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAD binding domain, putative n=2 Tax=Oryza sativa Japonica Group RepID=Q53RM2_ORYSJ	-	-	3.0e-12	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302668.1	predicted protein [Populus trichocarpa]	7.0e-13	47%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR72

Fln msg: Distance to subject end: 512 aas, atg_distance in limit (1-15): atg_distance = 9, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 79 - 601

Fln protein: MVWQLIIYLVLLPCVFHVVQGSPQGEPVRCSDTTGLTNCTVSNAYGMFPDRIPCRAASALFPSNEQEVMQAVAMATRRK

Protein Length: 80

Fln nts: CTGAAGTTTAATA_-_ATGGTTTGGCAGTTAATAATCTACCTCGTCCTCCTCCCCTGTGTTTTTCATGTCGTCCAGGGGAGCCCGCAGGGCGAGCCCGTGAGATGCTCAGACACAACAGGCTTAACAAACTGCACAGTCTCTAATGCCTACGGGATGTTCCCGGATCGAATCCCCTGCAGGGCTGCTTCTGCTCTGTTTCCTTCCAATGAACAAGAAGTGATGCAGGCCGTTGCCATGGCGACTCGGAGGAAGCA

Fln Alignment:

F7QVD2L01BL8S0___IMVWQLIIYLVLLPCVFHVVQGSPQGEPVRCSDTTGLTNCTVSNAYGMFPDRIPCRAASALFPSNEQEVMQAVAMATRRK
B8LR72_______________IALWVCVVVLVYLRRL-GVECCSISPPTVVCSG--GGRGCDIFNNQGLWEDRTPCRAAASVFPTTEAELVAAVAQAVKKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain