SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59421

Length: 417 nt

UniGene Fasta

>sp_v3.0_unigene59421
ATGGGGATTTGCACATTTTTTGCCATCTCAGCTCAATACTCGGCCTCATAGGTGGCTGAATTGTTTTTCACGGAGGTGTTTCGGCTACATGGTCTTCCGAAGATCATTGTCAGTGACCGAGACAACAGGTTCATGGAGGGATTTTGGTAGGAGCTATTCTAACTGGTGGACATTGAGCTCACTCCGAGCACTAGTTATCACCCCAAGACCGACGGGCAAATGGAGATAGTTAACAAATGGCTAGAGGGTTACTTGCGTAACTATGTGATGGGCCATCAACAAGCATGGATATGGTGCTTACACTTGGGAGAGTACTGCTACAACACCACGTACCACATGTCCATAGGTATGTCTCAATTCCGAGCTCTATACGGTTACGATGCATTGTCTTTTGCTGACGTGATGTTTGGAGATAGC

Ace file of the UniGene sp_v3.0_unigene59421

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN	-	-	4.0e-27	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%
Sma3	Retrotransposon protein, putative, unclassified	-	-	5.962e-06	-

Source	Gene names
Sma3	At2g14640; LOC_Os03g30360; LOC_Os03g61170; LOC_Os11g08610; LOC_Os12g18080; OJ1111_B11.4; OSJNBa0004L19.22; OSJNBa0010E04.26; OSJNBb0056B16.6; OSJNBb0059G13.29; Os03g0827000; Os04g0316700; Os09g0135100; T21B14.24; T9I1.13; VITISV_002634; VITISV_013478; VIT

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C2E1

Fln msg: Distance to subject end: 146 aas, your sequence is shorter than subject: 139 - 422

Fln protein: MGICTFFAISAQYSAS*VAELFFTEVFRLHGLPKIIVSDRDNRFMEGFW*ELF*LVDIELTPSTSYHPKTDGQMEIVNKWLEGYLRNYVMGHQQAWIWCLHLGEYCYNTTYHMSIGMSQFRALYGYDALSFADVMFGDS

Protein Length: 140

Fln nts: ATGGGGATTTGCACATTTTTTGCCATCTCAGCTCAATACTCGGCCTCATAGGTGGCTGAATTGTTTTTCACGGAGGTGTTTCGGCTACATGGTCTTCCGAAGATCATTGTCAGTGACCGAGACAACAGGTTCATGGAGGGATTTTGGTAGGAGCTATTCTAACTGGTGGACATTGAGCTCACTCCGAGCACTAGTTATCACCCCAAGACCGACGGGCAAATGGAGATAGTTAACAAATGGCTAGAGGGTTACTTGCGTAACTATGTGATGGGCCATCAACAAGCATGGATATGGTGCTTACACTTGGGAGAGTACTGCTACAACACCACGTACCACATGTCCATAGGTATGTCTCAATTCCGAGCTCTATACGGTTACGATGCATTGTCTTTTGCTGACGTGATGTTTGGAGATAGC

Fln Alignment:

F7QVD2L01DBCAX___FFAISAQYSAS*VAELFFTEVFRLHGLPKIIVSDRDNRFMEGFW*ELF*LVDIELTPSTSYHPKTDGQMEIVNKWLEGYLRNYVMGHQQAWIWCLHLGEYCYNTTYHMSIGMSQFRALYG
A5C2E1_______________FLALAHPFIAKMVAEKFVEGVVKLHGMPKSIISDRDLVFMSQFWQEFFKLSGIQLKMSSSYHPQTDGQSEVVNRCVEQYLRCYAHHHPRKWSFFLPWAEFWYNTTYHASTGMTPFQALYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain