SustainPineDB

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Assembly info
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SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59316

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene59316
ATGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTAAAGAACTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGA

Ace file of the UniGene sp_v3.0_unigene59316

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	6.0e-17	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Probable protein phosphatase 2C 59	-	-	3.385e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	7.896e-17	-

Source	Gene names
Sma3	24K23.16; At4g31750; At5g10740; At5g24940; At5g53140; F28M20.60; F6A4.150; GSVIVT00008801001; LOC_Os01g43100; LOC_Os02g05630; LOC_Os04g56450; LOC_Os06g48300; MAJ23.3; MFH8.8; MPC9; OSIGBa0132E09-OSIGBa0108L24.16; OSJNBa0011F23.20; OSJNBa0015K02.7; OSJNBa0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31750.1	WIN2 HOPW1-1-interacting 2 chr4:15364657-15367207 REVERSE LENGTH=311	2.0e-19	72%
RefSeq	Arabidopsis thaliana	NP_194903.2	putative protein phosphatase 2C 59 [Arabidopsis thaliana]	3.0e-19	72%
RefSeq	Populus trichocarpa	XP_002308720.1	predicted protein [Populus trichocarpa]	2.0e-18	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg: Separated hits, possible frame ERROR between 62 and 70, Distance to subject end: 26 aas, your sequence is shorter than subject: 68 - 281

Fln protein: GGVLAVSRAFGDRLLKQYVxxxxEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELA

Protein Length: 69

Fln nts: ATGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTxxxxxxxxxTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGA

Fln Alignment:

F7JJN6E01DD1PZ___GGVLAVSRAFGDRLLKQYVVxxxEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELA
A9NWY3_______________GGVLAVSRAFGDRLLKQYVVxxxEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain