SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59302

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene59302
ATGGGTATGAACAAAGCAACTGCTGAGTGCATTATGGAACTGCCTACGAATTGTCCCATCTCTAGAATTGAGATTCAGGGAGACATCAATCTGTTAAAGCAGTTAGCTTGTCTGGAGGCCTGCAAACAGCTCCATAAAGTTGGAGCATTGACAAATTATCTTCTGCCAGGAAGAGAAGAAGAAGATGAGG

Ace file of the UniGene sp_v3.0_unigene59302

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein dicer-like 2 [Arabidopsis thaliana] ref\|NP_001189798.1\| protein dicer-like 2 [Arabidopsis thaliana] sp\|Q3EBC8.2\|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb\|AEE73924.1\| protein dice	-	-	4.0e-08	44%
FL-Next	Isoform 2 of Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300	-	-	0.0	44%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315119.1	dicer-like protein [Populus trichocarpa]	3.0e-12	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q3EBC8-2

Fln msg: Distance to subject end: 744 aas, your sequence is shorter than subject: 63 - 1374

Fln protein: MGMNKATAECIMELPTNCPISRIEIQGDINLLKQLACLEACKQLHKVGALTNYLLPGREEEDE

Protein Length: 64

Fln nts: ATGGGTATGAACAAAGCAACTGCTGAGTGCATTATGGAACTGCCTACGAATTGTCCCATCTCTAGAATTGAGATTCAGGGAGACATCAATCTGTTAAAGCAGTTAGCTTGTCTGGAGGCCTGCAAACAGCTCCATAAAGTTGGAGCATTGACAAATTATCTTCTGCCAGGAAGAGAAGAAGAAGATGAGG

Fln Alignment:

F7JJN6E01BVICH___MNKATAECIMELPTNCPISRIEIQGDINLLKQLACLEACKQLHKVGALTNYLLP
Q3EBC8-2_____________VNKDQGSCTLYLPKSCPVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDHLVP

SSRs (tot: 1)

Start position	End position	Sequence	Length
174	185	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain