SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59195

Length: 255 nt

UniGene Fasta

>sp_v3.0_unigene59195
TTTTGATACCAAAGATTGTGGGGGAGATGGTACCCCGCTCATCCTTTCTGACATTATTGGATCTGAAGATGCTTTGGGTGATATGGATTTAAAGGTTGCTGGGAATGAAGAAGGTATCACAGCATTTCAAATGGACTTAAAGCTGGTTGTTCCTACATCCCTCCGATAGGGATCAAAATACCAATCCTAAAGCAAGCTCTTGTACAAGCGAGGAAAGGAATATGTCACATTCTTGCTGAAATGACAAAATGTTAT

Ace file of the UniGene sp_v3.0_unigene59195

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SI65_RICCO	-	-	1.0e-17	78%
FL-Next	tr=Polyribonucleotide nucleotidyltransferase, putative; Ricinus communis (Castor bean).	-	-	0.0	78%
Sma3	Polynucleotide phosphorylase	-	-	2.613e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polyribonucleotide nucleotidyltransferase.	EC:2.7.7.8	-	2.613e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		2.613e-08	%
Sma3	Pyrimidine metabolism	00240		2.613e-08	%

Source	Gene names
Sma3	At3g03710; CHLREDRAFT_193253; F20H23.26; GSVIVT00003824001; MICPUN_79594; OSJNBa0050F10.4; OSTLU_34347; Os07g0168000; OsI_25038; OsJ_23227; PNP; PNP1; POPTRDRAFT_241943; POPTRDRAFT_248795; RCOM_1321070; So100RNP; T12J13.1; THAPSDRAFT_268644; pnp;

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	polyribonucleotide nucleotidyltransferase activity	GO:0004654	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	mRNA catabolic process	GO:0006402	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Recombinase, conserved site	IPR006118	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Polyribonucleotide nucleotidyltransferase	IPR012162	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Exoribonuclease, phosphorolytic domain 2	IPR015847	-	-
Sma3	Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type	IPR015848	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03710.1	RIF10, PNP polyribonucleotide nucleotidyltransferase, putative chr3:919542-924906 FORWARD LENGTH=922	3.0e-19	72%
RefSeq	Arabidopsis thaliana	NP_187021.2	polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]	4.0e-19	72%
RefSeq	Populus trichocarpa	XP_002325864.1	predicted protein, partial [Populus trichocarpa]	5.0e-20	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SI65

Fln msg: Separated hits, possible frame ERROR between 145 and 187, Distance to subject end: 265 aas, your sequence is shorter than subject: 85 - 948

Fln protein: FDTKDCGGDGTPLILSDIIGSEDALGDMDLKVAGNEEGITAFQMDLKxxxxxxxxxxxxxxxLKQALVQARKGICHILAEMTKCY

Protein Length: 86

Fln nts: TTTTGATACCAAAGATTGTGGGGGAGATGGTACCCCGCTCATCCTTTCTGACATTATTGGATCTGAAGATGCTTTGGGTGATATGGATTTAAAGGTTGCTGGGAATGAAGAAGGTATCACAGCATTTCAAATGGACTTAAAGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTAAAGCAAGCTCTTGTACAAGCGAGGAAAGGAATATGTCACATTCTTGCTGAAATGACAAAATGTTAT

Fln Alignment:

F7JJN6E01BN3WG___DTKDCGGDGTPLILSDIIGSEDALGDMDLKVAGNEEGITAFQMDLKLxxxxxxxxxxxxxxLKQALVQARKGICHILAEMTKC
B9SI65_______________DTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVxxxxxxxxxxxxxxMRRALLQARDGRKHILAEMLKC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain