SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59121

Length: 456 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene59121
CGGCCATGAACTTAACCATGNTAATTANCGGGCGCATAATGCTTGGAGTGGGAATCGGCTTCTCAAATCAGGTTCTTCCTCTGTATCTCTTAGAGTTGGCTCCTCCAAAAATCCGGGGCGGACTTAATATATTGTTCCAATTGGCCACTACACTAGGGATCTTCACAGCAAATATGGTCAATTATAGGACTCAGAAAATAAAACTCTGGGGATGGCGTCTCTCTATCACTCTGGGGTTTGCTGCAGCTCCAGCACTTTTAATGACGGTTGCAGCGATGTTCCTTCCTGAGTCTCCCAACAGTCTGATAGAACGTGGCCATCTCGACAAAGGCCTCGCTGTGCTGGAGAAGATCAGGGGGCACTGGGAACGTGAAAGCAGAGTTCGAAAGAATAATAGGTACGAATAGACAAGACCGACAACTAGGTTAAAATCCATCAGGCATCCGTTCAGGAATA

Ace file of the UniGene sp_v3.0_unigene59121 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sugar carrier protein A n=6 Tax=Andropogoneae RepID=B6TMZ9_MAIZE	-	-	3.0e-36	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Sugar transporter, putative	-	-	5.105e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	5.308e-20	-

Source	Gene names
Sma3	AGAA.1; At1g07340; At1g11260; At1g50310; At1g77210; At3g05960; At3g19940; At4g02050; At4g21480; At5g23270; At5g26250; At5g26340; At5g61520; B1008E06.22-1; B1008E06.22-2; B1317D11.119-1; F14I3.9; F18E5.100; F22G5.32; F2O10.8; F9D12.17; F9D12.9; GSVIVT00004

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	-
Sma3	monosaccharide transmembrane transporter activity	GO:0015145	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	monosaccharide transport	GO:0015749	Biological Process	-
Sma3	carbohydrate transmembrane transport	GO:0034219	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02050.1	STP7 sugar transporter protein 7 chr4:898387-900095 REVERSE LENGTH=513	2.99878e-43	58%
RefSeq	Arabidopsis thaliana	NP_192114.1	sugar transport protein 7 [Arabidopsis thaliana]	3.9937e-43	58%
RefSeq	Populus trichocarpa	XP_002308382.1	predicted protein [Populus trichocarpa]	3.00018e-42	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ43

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 232 aas, your sequence is shorter than subject: 135 - 517

Fln protein: AMNLTMVIIGRIMLGVGIGFSNQVLPLYLLELAPPKIRGGLNILFQLATTLGIFTANMVNYRTQKIKLWGWRLSITLGFAAAPALLMTVAAMFLPESPNSLIERGHLDKGLAVLEKIRGHWERESRVRKNNRYE*

Protein Length: 136

Fln nts: CGGCCATGAACTTAACCATGgTAATTAtCGGGCGCATAATGCTTGGAGTGGGAATCGGCTTCTCAAATCAGGTTCTTCCTCTGTATCTCTTAGAGTTGGCTCCTCCAAAAATCCGGGGCGGACTTAATATATTGTTCCAATTGGCCACTACACTAGGGATCTTCACAGCAAATATGGTCAATTATAGGACTCAGAAAATAAAACTCTGGGGATGGCGTCTCTCTATCACTCTGGGGTTTGCTGCAGCTCCAGCACTTTTAATGACGGTTGCAGCGATGTTCCTTCCTGAGTCTCCCAACAGTCTGATAGAACGTGGCCATCTCGACAAAGGCCTCGCTGTGCTGGAGAAGATCAGGGGGCACTGGGAACGTGAAAGCAGAGTTCGAAAGAATAATAGGTACGAATAGACAAGACCGACAACTAGGTTAAAATCCATCAGGCATCCGTTCAGGAATA

Fln Alignment:

F7QVD2L01AGDHX___AMNLTMVIIGRIMLGVGIGFSNQVLPLYLLELAPPKIRGGLNILFQLATTLGIFTANMVNYRTQKIKLWGWRLSITLGFXXXXXXXXXXXXMFLPESPNSLIERGHLDKGLAVLEKIRG
B8LQ43_______________AKNLTMLISGRVMLGVGIGFANQAVPLYLSELAPPQTRGGLNIMFQLFTTLGIFAANMVNYRAQKVKSWGWRLSWTLGLAAAPALLMTVGGIFLPETPNSLIERGYLGKGRAVLEKIRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain