SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59075

Length: 410 nt

UniGene Fasta

>sp_v3.0_unigene59075
ACTTGCAGTTTCTTCTTGTGTGCTAAAAGCTTTCAAGGATAAAGGAGGCCTTTTCATCATGACTGGTGATGTTCTCCCTTGTTTTGATTCATCAATCATGTCCTTTCCAGATGATGGAGCATGTGTTGTCACAGTCCCTACCACTCTTGATATTGCTACAAACCATGGCGTGATTGCATTTTTGCAATAAGGGGCAAAGCATGGCAAGATATTATTAAACTTTCTAGTACATCACCAAGGCTCATTTCGGAACTTTTTGAAGAGAAAAGAAGAGTGTATTTTTCCTCCAAGTTCTTGCTTGTAGGTGTCCAAATAATGTTACACAGGTGAGCTTATATGAGGACTTGGCAGCAGCCTGGGTATCTGCAAAACATGAGTGGTTGAAAACTCGTCCTCTTGGCTTGGAGCTG

Ace file of the UniGene sp_v3.0_unigene59075

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	L-fucokinase/GDP-L-fucose pyrophosphorylase [Arabidopsis thaliana] sp\|Q9LNJ9.2\|FKGP_ARATH RecName: Full=Bifunctional fucokinase/fucose pyrophosphorylase; Short=AtFKGP; Includes: RecName: Full=L-fucokinase; Includes: RecName: Full=Fucose-1-phosphate guanyl	-	-	6.0e-17	68%
FL-Next	sp=Bifunctional fucokinase/fucose pyrophosphorylase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%

Source	Gene names
Sma3	F6F3.3; GSVIVT00008653001; LOC_Os03g02410; OSJNBa0090O10.21; Os03g0115100; OsI_09725; OsJ_09163; PHYPADRAFT_171137; POPTRDRAFT_572423; RCOM_0716030; VITISV_022079;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	phosphorylation	GO:0016310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Galactokinase/homoserine kinase	IPR001174	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	L-fucokinase	IPR012887	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01220.1	FKGP, AtFKGP L-fucokinase/GDP-L-fucose pyrophosphorylase chr1:91750-95552 FORWARD LENGTH=1055	8.0e-21	68%
RefSeq	Arabidopsis thaliana	NP_563620.1	L-fucokinase/GDP-L-fucose pyrophosphorylase [Arabidopsis thaliana]	1.0e-20	68%
RefSeq	Populus trichocarpa	XP_002320880.1	predicted protein [Populus trichocarpa]	3.0e-21	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LNJ9

Fln msg: Separated hits, possible frame ERROR between 175 and 285, Distance to subject end: 721 aas, your sequence is shorter than subject: 137 - 1055

Fln protein: LAVSSCVLKAFKDKGGLFIMTGDVLPCFDSSIMSFPDDGACVVTVPTTLDIATNHGVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQVLACRCPNNVTQVSLYEDLAAAWVSAKHEWLKTRPLGLEL

Protein Length: 138

Fln nts: ACTTGCAGTTTCTTCTTGTGTGCTAAAAGCTTTCAAGGATAAAGGAGGCCTTTTCATCATGACTGGTGATGTTCTCCCTTGTTTTGATTCATCAATCATGTCCTTTCCAGATGATGGAGCATGTGTTGTCACAGTCCCTACCACTCTTGATATTGCTACAAACCATGGCGTGATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTCCAAGTTCTTGCTTGTAGGTGTCCAAATAATGTTACACAGGTGAGCTTATATGAGGACTTGGCAGCAGCCTGGGTATCTGCAAAACATGAGTGGTTGAAAACTCGTCCTCTTGGCTTGGAGCTG

Fln Alignment:

F7QVD2L01CO7T1___LAVSSCVLKAFKDKGGLFIMTGDVLPCFDSSIMSFPDDGACVVTVPTTLDIATNHGVIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQVLACRCPNNVTQV-------SLYEDLAAAWVSAKHEWLKTRPLG
Q9LNJ9_______________LAIASCARQAFQDQGGLFIMTGDVLPCFDAFKMTLPEDAASIVTVPITLDIASNHGVIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVALGCSCQPMILELIGSKKEMSLYEDLVAAWVPSRHDWLRTRPLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain