SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59060

Length: 381 nt

UniGene Fasta

>sp_v3.0_unigene59060
ATGGGGGAGGTTACGCATTGAAGTTTAACCTTTCCAGGTTGTGTGCTGTGACGAACTTGCAGGCTTGAGAGGTAAGAGGTCTGCTTCTACAACCACTCTGTAGCAGTTGGAGATGGTGATTCCGAAGCAGTATGCGGAGAAGTATTTCCCTCTGGACGCCAATTCCAGCGAGAAGGGACTGCTTTTAAATTTCGAAGATAACACGGGGAAAGTCTGGCAATTCCGTTATTCATATTGGAACAGCAGCCAGAGCTACGTGCTAACCAAGGGGTGGAGCCGTTTTGTGAAGGATAAGAGATTGGAAACAGGTGACATTGTTTCGTTTCACAAAGGATTTGCTCAGACTGATCACTTCTACATCAGCTGGAGTCGCAGGCCGTC

Ace file of the UniGene sp_v3.0_unigene59060

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RYX9_RICCO	-	-	5.0e-34	72%
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	0.0	38%
Sma3	Putative AP2 domain containing protein RAP2.8	-	-	6.093e-08	-

Source	Gene names
Sma3	ARF14; ARF31; ARF32; At1g01030; At1g13260; At1g25560; At1g68840; At2g36080; At2g46870; At3g11580; At3g25730; At3g61970; At4g01500; At5g06250; F11O4.9; F14K14.5; F19D11.25; F21F14.140; F24K9.25; F2J7.3; F9C22.1; GSVIVT00000473001; GSVIVT00021555001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Xyloglucan fucosyltransferase	IPR004938	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61970.1	NGA2 AP2/B3-like transcriptional factor family protein chr3:22951829-22952728 FORWARD LENGTH=299	5.0e-40	68%
RefSeq	Arabidopsis thaliana	NP_191756.1	B3 domain-containing transcription factor NGA2 [Arabidopsis thaliana]	7.0e-40	68%
RefSeq	Populus trichocarpa	XP_002315958.1	AP2 domain-containing transcription factor [Populus trichocarpa]	2.0e-34	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 639 aas, your sequence is shorter than subject: 126 - 919

Fln protein: WGRLRIEV*PFQVVCCDELAGLRGKRSASTTTL*QLEMVIPKQYAEKYFPLDANSSEKGLLLNFEDNTGKVWQFRYSYWNSSQSYVLTKGWSRFVKDKRLETGDIVSFHKGFAQTDHFYISWSRRP

Protein Length: 127

Fln nts: ATGGGGGAGGTTACGCATTGAAGTTTAACCTTTCCAGGTTGTGTGCTGTGACGAACTTGCAGGCTTGAGAGGTAAGAGGTCTGCTTCTACAACCACTCTGTAGCAGTTGGAGATGGTGATTCCGAAGCAGTATGCGGAGAAGTATTTCCCTCTGGACGCCAATTCCAGCGAGAAGGGACTGCTTTTAAATTTCGAAGATAACACGGGGAAAGTCTGGCAATTCCGTTATTCATATTGGAACAGCAGCCAGAGCTACGTGCTAACCAAGGGGTGGAGCCGTTTTGTGAAGGATAAGAGATTGGAAACAGGTGACATTGTTTCGTTTCACAAAGGATTTGCTCAGACTGATCACTTCTACATCAGCTGGAGTCGCAGGCCGTC

Fln Alignment:

F7QVD2L01EBGGC___IPKQYAEKYFP-LDANSSEKGLLLNFEDNTGKVWQFRYSYWNSSQSYVLTKGWSRFVKDKRLETGDIVSF
E1UHY2_______________VPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain