SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58976

Length: 304 nt

UniGene Fasta

>sp_v3.0_unigene58976
AATGACGGTTTTCTTCCGAACAAAGATACATCATACAGTGGACGGTTCAGGCCTTTACTTGGGCGCACTTTACTTCGGCATCCTCACCTGTATGTTTAATGGATTTACAGAGACTGCCATGACCATTGCGAAACTTCCCGTTTTATATAAACAGAGAGATCTGTTCTTTTACCCCTGTTGGGTATATGCGATCCCAACATGGGCATTTAGTATTCCAACTTCAGTAGTGGAATCTGGCATTTGGGTCTTCGTAACCTATTATGTCATCGGTTTCGATTCAGATGCTCAAAGGTTCTTTCGTCAG

Ace file of the UniGene sp_v3.0_unigene58976

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter [Catharanthus roseus]	-	-	6.0e-36	65%
FL-Next	sp=ABC transporter G family member 32; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	ATP-binding cassette transporter, putative	-	-	1.474e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	7.553e-29	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	1.926e-08	-

Source	Gene names
Sma3	ABC; ABC1; At1g15210; At1g15520; At1g59870; At1g66950; At2g26910; At2g36380; B1045F02.15; B1090H08.39; F12C20.5; F1O11.1; F1O19.3; F23H11.19; F9L1.15; GSVIVT00016813001; GSVIVT00016819001; GSVIVT00021655001; GSVIVT00022041001; GSVIVT00022062001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26910.1	PDR4, ATPDR4 pleiotropic drug resistance 4 chr2:11481623-11487874 FORWARD LENGTH=1420	5.0e-37	58%
RefSeq	Arabidopsis thaliana	NP_180259.1	ABC transporter G family member 32 [Arabidopsis thaliana]	6.0e-37	58%
RefSeq	Populus trichocarpa	XP_002324840.1	predicted protein [Populus trichocarpa]	7.0e-38	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O81016

Fln msg: Distance to subject end: 798 aas, your sequence is shorter than subject: 101 - 1420

Fln protein: MTVFFRTKIHHTVDGSGLYLGALYFGILTCMFNGFTETAMTIAKLPVLYKQRDLFFYPCWVYAIPTWAFSIPTSVVESGIWVFVTYYVIGFDSDAQRFFRQ

Protein Length: 102

Fln nts: AATGACGGTTTTCTTCCGAACAAAGATACATCATACAGTGGACGGTTCAGGCCTTTACTTGGGCGCACTTTACTTCGGCATCCTCACCTGTATGTTTAATGGATTTACAGAGACTGCCATGACCATTGCGAAACTTCCCGTTTTATATAAACAGAGAGATCTGTTCTTTTACCCCTGTTGGGTATATGCGATCCCAACATGGGCATTTAGTATTCCAACTTCAGTAGTGGAATCTGGCATTTGGGTCTTCGTAACCTATTATGTCATCGGTTTCGATTCAGATGCTCAAAGGTTCTTTCGTCAG

Fln Alignment:

F7QVD2L01DUQ0N___MTVFFRTKIHH-TVDGSGLYLGALYFGILTCMFNGFTETAMTIAKLPVLYKQRDLFFYPCWVYAIPTWAFSIPTSVVESGIWVFVTYYVIGFDSDAQRFFRQ
O81016_______________MTVFCRTTMHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain