SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58928

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene58928
ACTAACGGCTCGCAGTTCTTCATCTAGTAACCGCAACAGACCTCGTGGCTGGATGGCAAGCATGTCGTATTTGGTCAAGTTGTAGAGGGTTTGGAGGTCGTGCGCGAGATCGAGAAGGTTGGATCTGGATCTGGCAGAACTTCAAAGCCGGTTGTCATTGCCGATCTGGACAGCTCGCTT

Ace file of the UniGene sp_v3.0_unigene58928

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI	-	-	1.0e-18	89%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine).	-	-	0.0	92%
Sma3	Peptidyl-prolyl cis-trans isomerase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	Gene names
Sma3	43H1; 46C02.10; At2g16600; At2g21130; At2g29960; At3g56070; At4g34870; At4g38740; At5g13120; B1331F11.9; CHLREDRAFT_30639; CHLREDRAFT_34270; CYC063; CYN19-3; CYN19-4; CYN20-1; CYP; CYP1; CYP18; CYP18-1; CYP18-2; CYP18-3; CYP18-4; CYP19-1; CYP19-2; CYP19-3

Source	GOs	Term	Type	Identity
Sma3	membrane fraction	GO:0005624	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	multivesicular body	GO:0005771	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	peptide binding	GO:0042277	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	mRNA splicing factor SYF2	IPR013260	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G16600.1	ROC3 rotamase CYP 3 chr2:7200862-7201383 FORWARD LENGTH=173	2.0e-24	85%
RefSeq	Arabidopsis thaliana	NP_001077901.1	Peptidyl-prolyl cis-trans isomerase CYP19-1 [Arabidopsis thaliana]	2.0e-24	85%
RefSeq	Populus trichocarpa	XP_002305488.1	predicted protein [Populus trichocarpa]	1.0e-22	76%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5Y2E8

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 60 - 172

Fln protein: TNGSQFFI**PQQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIADLDSSL

Protein Length: 61

Fln nts: ACTAACGGCTCGCAGTTCTTCATCTAGTAACCGCAACAGACCTCGTGGCTGGATGGCAAGCATGTCGTATTTGGTCAAGTTGTAGAGGGTTTGGAGGTCGTGCGCGAGATCGAGAAGGTTGGATCTGGATCTGGCAGAACTTCAAAGCCGGTTGTCATTGCCGATCTGGACAGCTCGCTT

Fln Alignment:

F7JJN6E01AV0BH___TNGSQFFI**PQQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIAD
Q5Y2E8_______________TNGSQFFIC-TAQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain