SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58900

Length: 403 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene58900
GCTTGTGCCAATCTAGCAGCTCTACAATGTTGCAAGCACATTCACTGTTACATAATTGTAAGAGGATTTGAGTCAGATGTTCGTGTGGTCAATGCCCTTATAGATGCCTATGCCAAGTGCGGAAGTTTACAGTCTGCACGCCAATTGTTTGACGGCATGTCTAACAGAGATGTTGTTTCATGGAATGCAATAATTGCAGGATATGGTATGGACGGTTATGGTGAGGCCGCCATTGCCCTCTTTGAACAAATGCAGCGGACAGGCATGGAACCAGATGAAATTACTTTTATTGGTGTCTTGTCTGCTTGTAGTCATGCAGGGTTGGTGGACGAAGGTCGTCGATATTTCGATCGTATGCAGCGAGATTATGCCATCCAACCCACACTAGAGCATTATGCATCCA

Ace file of the UniGene sp_v3.0_unigene58900 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative pentatricopeptide repeat protein n=5 Tax=Malvoideae RepID=B2ZAT1_9ROSI	-	-	1.0e-36	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	7.618e-18	-

Source	Gene names
Sma3	At1g05750; At1g56570; At2g13600; At2g20540; At3g02330; At3g03580; At3g16610; At3g23330; At3g46790; At3g53360; At3g57430; At4g02750; At4g14050; At4g14820; At4g18750; At4g37380; At4g39530; B1046G12.4; B1358B12.23; CRR2; F11A12.2; F14P3.1; F23K16.160; F25P12

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	PDZ-binding protein, CRIPT	IPR019367	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18750.1	DOT4 Pentatricopeptide repeat (PPR) superfamily protein chr4:10304850-10307465 FORWARD LENGTH=871	2.94273e-44	54%
RefSeq	Arabidopsis thaliana	NP_193610.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.94273e-44	54%
RefSeq	Populus trichocarpa	XP_002331135.1	predicted protein [Populus trichocarpa]	1.99965e-42	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 134 - 232

Fln protein: ACANLAALQCCKHIHCYIIVRGFESDVRVVNALIDAYAKCGSLQSARQLFDGMSNRDVVSWNAIIAGYGMDGYGEAAIALFEQMQRTGMEPDEITFIGVLSACSHAGLVDEGRRYFDRMQRDYAIQPTLEHYAS

Protein Length: 135

Fln nts: GCTTGTGCCAATCTAGCAGCTCTACAATGTTGCAAGCACATTCACTGTTACATAATTGTAAGAGGATTTGAGTCAGATGTTCGTGTGGTCAATGCCCTTATAGATGCCTATGCCAAGTGCGGAAGTTTACAGTCTGCACGCCAATTGTTTGACGGCATGTCTAACAGAGATGTTGTTTCATGGAATGCAATAATTGCAGGATATGGTATGGACGGTTATGGTGAGGCCGCCATTGCCCTCTTTGAACAAATGCAGCGGACAGGCATGGAACCAGATGAAATTACTTTTATTGGTGTCTTGTCTGCTTGTAGTCATGCAGGGTTGGTGGACGAAGGTCGTCGATATTTCGATCGTATGCAGCGAGATTATGCCATCCAACCCACACTAGAGCATTATGCATCCA

Fln Alignment:

F7JJN6E01DJN5S___ACANLAALQCCKHIHCYIIVRGFESDVRVVNALIDAYAKCGSLQSARQLFDGMSNRDVVSWNAIIAGYGMDGYGEAAIALFEQMQRTGMEPDEITFIGVLSACSHAGLVDEGRRYFDRMQRDYAIQPTLEHY
D5AB53_______________ACANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain