SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58880

Length: 136 nt

UniGene Fasta

>sp_v3.0_unigene58880
ATGGGGACGCTAGGCACAGAGGCTGTTGGCTCAATTCTCTCTCCATCCAGTGTTAATGGAGTTGTTGGAATAAAACCCACAGTTGGACTCACCAGCAGGGCTGGAGTCATTCCCATCTTACACCACCAAGCACTGT

Ace file of the UniGene sp_v3.0_unigene58880

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amidase family protein n=1 Tax=Solanum demissum RepID=Q94GC8_SOLDE	-	-	2.0e-10	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Amidase, putative	-	-	1.848e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Amidase.	EC:3.5.1.4	-	5.796e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Arginine and proline metabolism	00330	5.796e-07	%
Sma3	Phenylalanine metabolism	00360	5.796e-07	%
Sma3	Tryptophan metabolism	00380	5.796e-07	%
Sma3	Cyanoamino acid metabolism	00460	5.796e-07	%
Sma3	Aminobenzoate degradation	00627	5.796e-07	%
Sma3	Styrene degradation	00643	5.796e-07	%
Sma3	Biosynthesis of plant hormones	01070	5.796e-07	%

Source	Gene names
Sma3	26.t00037; GSVIVT00036076001; GSVIVT00036077001; GSVIVT00036081001; GSVIVT00036082001; LOC_Os10g06710; OSIGBa0140C02.5; OSIGBa0140C02.6; OSIGBa0140C02.7; OSIGBa0148J22.1; OSIGBa0148J22.2; OSIGBa0148J22.3; OSJNAa0034B05.13; OSJNBa0001M07.1; OSJNBa0001M07.2

Source	GOs	Term	Type	e value	Identity
Sma3	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	GO:0016884	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amidase	IPR000120	-	0.0	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002337144.1	predicted protein, partial [Populus trichocarpa]	9.0e-13	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7X4

Fln msg: Distance to subject end: 268 aas, your sequence is shorter than subject: 45 - 529

Fln protein: MGTLGTEAVGSILSPSSVNGVVGIKPTVGLTSRAGVIPILHHQAL

Protein Length: 46

Fln nts: ATGGGGACGCTAGGCACAGAGGCTGTTGGCTCAATTCTCTCTCCATCCAGTGTTAATGGAGTTGTTGGAATAAAACCCACAGTTGGACTCACCAGCAGGGCTGGAGTCATTCCCATCTTACACCACCAAGCACTGT

Fln Alignment:

F7JJN6E01E1X1O___TLGTEAVGSILSPSSVNGVVGIKPTVGLTSRAGVIPILHHQ
D5A7X4_______________TLGTETDGSILCPSGANAVVGIKPTVGLTSRAGVIPISHHQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain