SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58876

Length: 182 nt

UniGene Fasta

>sp_v3.0_unigene58876
CTTTCTGCTTTATCAAATTATATGCGAAGGGATTCTGAGATCAGACGGATTTCATTCAGGAATCAGGTGGTTATCTGGTGGGCTGGTTTGATGCGAGGAGCTGTTTCAATTGCCTTGGCATTCAATCAGTTCACAGTCTCTGGAATTACCTGGAATCCCGTGGAAGCCACTATGATCACAAT

Ace file of the UniGene sp_v3.0_unigene58876

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sodium/hydrogen exchanger n=4 Tax=Triticeae RepID=A7X9Z1_WHEAT	-	-	9.0e-16	70%
FL-Next	sp=Sodium/hydrogen exchanger; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Sodium/hydrogen exchanger	-	-	0.0	-

Source	Gene names
Sma3	At3g05030; At3g06370; At5g55470; F24P17.16; GSVIVT00008893001; GSVIVT00023595001; GSVIVT00027228001; HvNHX1; InNHX2; InNhx1; ItNHX1; LOC_Os11g42790; MTE17.18; NHEXL1a; NHEXL1b; NHEXL1c; NHX; NHX1; NHX2; NHX3; NHX4; NHXI; NhPurple; OSJNBa0077J22.22; Os05g0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sodium:hydrogen antiporter activity	GO:0015385	Molecular Function	-
Sma3	sodium ion binding	GO:0031402	Molecular Function	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	regulation of pH	GO:0006885	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Na+/H+ exchanger	IPR004709	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3		IPR018406	-	-
Sma3		IPR018407	-	-
Sma3	Cation/H+ exchanger, CPA1 family	IPR018422	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55470.1	ATNHX3, NHX3 Na+/H+ (sodium hydrogen) exchanger 3 chr5:22469553-22472585 REVERSE LENGTH=529	3.0e-19	63%
RefSeq	Arabidopsis thaliana	NP_200358.1	sodium/hydrogen exchanger 4 [Arabidopsis thaliana]	3.0e-19	63%
RefSeq	Populus trichocarpa	XP_002320366.1	sodium proton exchanger [Populus trichocarpa]	5.0e-14	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSW3

Fln msg: Distance to subject end: 119 aas, your sequence is shorter than subject: 60 - 552

Fln protein: LSALSNYMRRDSEIRRISFRNQVVIWWAGLMRGAVSIALAFNQFTVSGITWNPVEATMIT

Protein Length: 61

Fln nts: CTTTCTGCTTTATCAAATTATATGCGAAGGGATTCTGAGATCAGACGGATTTCATTCAGGAATCAGGTGGTTATCTGGTGGGCTGGTTTGATGCGAGGAGCTGTTTCAATTGCCTTGGCATTCAATCAGTTCACAGTCTCTGGAATTACCTGGAATCCCGTGGAAGCCACTATGATCACAAT

Fln Alignment:

F7JJN6E01C1O7H___LSALSNYMRRDSEIRRISFRNQVVIWWAGLMRGAVSIALAFNQFTVSGITWNPVEATMIT
C0PSW3_______________LSFLSNCLKRTPN-SRIGFRQQFVIWWAGLMRGAVSMALAYNQFTRSGLTKLPENAIMIT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain