SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58874

Length: 256 nt

UniGene Fasta

>sp_v3.0_unigene58874
TCAAGGGCTTAAAACTTTTCCAATGCCCTAAAGAGCTTGCGGAGGAACATTACAGAGACCTTAAATCGAAGCCTTTCTTCCCAAAATTGGTTAAGTACATCACATCTGGTCCGGTGGCTTGGGAAGGTCCGGGTATTGTAGCTGCTGCTCGTAAGCTCATTGGTGCTACAAATCCTCTGCAAGCTGAACCTGGTACCATTCGAGGCGATCTTGCAATTCAAGTTGGGAGGAATGTTGTTCATGGGAGTGATAGCCA

Ace file of the UniGene sp_v3.0_unigene58874

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleoside diphosphate kinase n=3 Tax=Andropogoneae RepID=C5YPK6_SORBI	-	-	3.0e-36	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Nucleoside diphosphate kinase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Nucleoside-diphosphate kinase.	EC:2.7.4.6	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Purine metabolism	00230	%
Sma3	Pyrimidine metabolism	00240	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT4G11010; At4g09320; At4g11010; At4g23900; At5g63310; Bc-NDPK1; Bc-NDPK3; BcNDK 2; BcNDK I; BcNDK III; CHLREDRAFT_180172; CHLREDRAFT_58944; F25I24.220; F8M12.12; FAP103; GSVIVT00006748001; GSVIVT00010474001; GSVIVT00019061001; LOC_Os10g41410; MDC12.28; M

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial intermembrane space	GO:0005758	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	nucleoside diphosphate kinase activity	GO:0004550	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	GTP biosynthetic process	GO:0006183	Biological Process	-
Sma3	UTP biosynthetic process	GO:0006228	Biological Process	-
Sma3	CTP biosynthetic process	GO:0006241	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to UV	GO:0009411	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside diphosphate kinase	IPR001564	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G63310.1	NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2 nucleoside diphosphate kinase 2 chr5:25372122-25373838 REVERSE LENGTH=231	9.94922e-44	77%
RefSeq	Arabidopsis thaliana	NP_568970.2	nucleoside diphosphate kinase II [Arabidopsis thaliana]	2.00386e-43	77%
RefSeq	Populus trichocarpa	XP_002318702.1	predicted protein [Populus trichocarpa]	0.0	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEB8

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 84 - 268

Fln protein: KGLKLFQCPKELAEEHYRDLKSKPFFPKLVKYITSGPVAWEGPGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDS

Protein Length: 85

Fln nts: TCAAGGGCTTAAAACTTTTCCAATGCCCTAAAGAGCTTGCGGAGGAACATTACAGAGACCTTAAATCGAAGCCTTTCTTCCCAAAATTGGTTAAGTACATCACATCTGGTCCGGTGGCTTGGGAAGGTCCGGGTATTGTAGCTGCTGCTCGTAAGCTCATTGGTGCTACAAATCCTCTGCAAGCTGAACCTGGTACCATTCGAGGCGATCTTGCAATTCAAGTTGGGAGGAATGTTGTTCATGGGAGTGATAGCCA

Fln Alignment:

F7JJN6E01BVRA8___KGLKLFQCPKELAEEHYRDLKSKPFFPKLVKYITSGPV---AWEGPGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDS
D5AEB8_______________KGLKLFQCPTELAEEHYRDLKSKSFFPKLVKYITSGPVVCMAWEGPGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain