SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58801

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene58801
TGTCAGCGAGTACGTGATTGTGGGCGCCATGCTTGCAGACGGCGATGTTGTGATGGGGATTGCCCTCCTTGCGCGGAGAAAGCTTCGATGTAACAATCACAAATGTCCTGCTCCCTGTCACAGAGGTAATTGTGCACCTTGCCCAGTTACAGTTCGCATTTCTTGTGCATGTGGAGAAACATCATATGAGGTTCCCTGTTGGAGCAGAAAGGGGACTGA

Ace file of the UniGene sp_v3.0_unigene58801

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor-like protein [Arabidopsis thaliana] gb\|AED90905.1\| transcription factor-like protein [Arabidopsis thaliana]	-	-	4.0e-14	73%
FL-Next	sp=NF-X1-type zinc finger protein NFXL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%

Source	Gene names
Sma3	GSVIVT00029294001; POPTRDRAFT_770209; RCOM_0179350;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05660.1	" ATNFXL2 sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors chr5:1691113-1695464 REVERSE LENGTH=880"	1.0e-18	73%
RefSeq	Arabidopsis thaliana	NP_196185.3	transcription factor-like protein [Arabidopsis thaliana]	2.0e-18	73%
RefSeq	Populus trichocarpa	XP_002316211.1	predicted protein [Populus trichocarpa]	1.0e-19	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FFK8

Fln msg: Distance to subject end: 403 aas, your sequence is shorter than subject: 72 - 883

Fln protein: VSEYVIVGAMLADGDVVMGIALLARRKLRCNNHKCPAPCHRGNCAPCPVTVRISCACGETSYEVPCWSRKGT

Protein Length: 73

Fln nts: TGTCAGCGAGTACGTGATTGTGGGCGCCATGCTTGCAGACGGCGATGTTGTGATGGGGATTGCCCTCCTTGCGCGGAGAAAGCTTCGATGTAACAATCACAAATGTCCTGCTCCCTGTCACAGAGGTAATTGTGCACCTTGCCCAGTTACAGTTCGCATTTCTTGTGCATGTGGAGAAACATCATATGAGGTTCCCTGTTGGAGCAGAAAGGGGACTGA

Fln Alignment:

F7JJN6E01EGHKD___RKLRCNNHKCPAPCHRGNCAPCPVTVRISCACGETSYEVPC
Q9FFK8_______________KKLRCRNHKCQSPCHQGPCAPCPIMVTISCACGETHFEVPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain