SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58748

Length: 323 nt

UniGene Fasta

>sp_v3.0_unigene58748
TCTGAGCTATTTATAAAAGTTACCGCACAAGACGTAATCTTGCAGATTGTGCTGTGCTGGTTGAGGAACTCTGGTGGCAAGCCATAGACTTTGTGACGCTTAAGCGAAGTACTGTTTCATTTTTTGATAAACCGGAAACTGCAATTTCCCGTTGGTCTCGAGCAAGAATTAAGGCTGCAAAGGTTGGCAAGGGTTTATCCAAGGATGACAAAGCTCGCAAACTAGCGTTCCAGCATTGGCTTGAGGCTATTGACCCACGACATCGTTATGGACATAATCTCCATTTCTATTATGATTCATGGTTTGAAAGTGATACAGTGCAA

Ace file of the UniGene sp_v3.0_unigene58748

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RK85_RICCO	-	-	0.0	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Calmodulin binding protein, putative	-	-	1.184e-17	-

Source	Gene names
Sma3	AT4g33050; At2g26190; At3g13600; At3g52870; At3g58480; At4g33050; B1114B07.32-1; CAM; F14P22.70; F26P21.170; F8J2_40; GSVIVT00016534001; GSVIVT00021647001; GSVIVT00024780001; GSVIVT00025453001; GSVIVT00032188001; GSVIVT00034127001; GSVIVT00034409001; GSVI

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	polar nucleus fusion	GO:0010197	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	FAR1 DNA binding domain	IPR004330	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G58480.1	calmodulin-binding family protein chr3:21629341-21631853 FORWARD LENGTH=575	71%
RefSeq	Arabidopsis thaliana	NP_001119107.1	calmodulin-binding protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002309213.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA39

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 359 aas, your sequence is shorter than subject: 107 - 581

Fln protein: *AIYKSYRTRRNLADCAVLVEELWWQAIDFVTLKRSTVSFFDKPETAISRWSRARIKAAKVGKGLSKDDKARKLAFQHWLEAIDPRHRYGHNLHFYYDSWFESDTVQ

Protein Length: 108

Fln nts: TCTGAGCTATTTATAAAAGTTACCGCACAAGACGTAATCTTGCAGATTGTGCTGTGCTGGTTGAGGAACTCTGGTGGCAAGCCATAGACTTTGTGACGCTTAAGCGAAGTACTGTTTCATTTTTTGATAAACCGGAAACTGCAATTTCCCGTTGGTCTCGAGCAAGAATTAAGGCTGCAAAGGTTGGCAAGGGTTTATCCAAGGATGACAAAGCTCGCAAACTAGCGTTCCAGCATTGGCTTGAGGCTATTGACCCACGACATCGTTATGGACATAATCTCCATTTCTATTATGATTCATGGTTTGAAAGTGATACAGTGCAA

Fln Alignment:

F51TW9001AEN03___IYKSYRTRRNLADCAVLVEELWWQAIDFVTLKRSTVSFFDKPETAISRWSRARIKAAKVGKGLSKDDKARKLAFQHWLEAIDPRHRYGHNLHFYYDSWFESDTVQ
D5AA39_______________VYRSYRTRRNLADCAVVAEELWWQAIEFATVKA------DKPDTAVSRWSRATVKAAKVGKGLSKDEKGKRLAFQHWLEAIDPRHRYGHNLHYYYDEWYKKETAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain