SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58712

Length: 183 nt

UniGene Fasta

>sp_v3.0_unigene58712
ATATCAGTCAATGTTCTAATATCTTATGGAGAAGTCAATGCTGGACAAGATTTCTATGAAGAGGAAGTGAAGGCTCTGTCTGGCATTTGAACAACAGTTTCACTATGGTGTTTCTTTGCATATGTGAGATTGCGGGAGCAGGAGATCAGGAATCTAATGTGGATTTCTGAATGTGTTGCTCAG

Ace file of the UniGene sp_v3.0_unigene58712

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable V-type proton ATPase subunit d n=6 Tax=Poaceae RepID=VA0D_ORYSJ	-	-	5.0e-08	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	AT3g28710/MZN14_20; At3g28710; At3g28715; GSVIVT00020891001; MZN14.22; Os01g0587000; OsI_02618; OsJ_02396; POPTRDRAFT_825536; RCOM_0535560; VHA-D1; VHA-D2; VITISV_042442;

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, subunit C/D	IPR002843	-	0.0	-
Sma3	ATPase, V0 complex, subunit D	IPR016727	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G28710.1	ATPase, V0/A0 complex, subunit C/D chr3:10773144-10775594 REVERSE LENGTH=351	1.0e-11	59%
RefSeq	Arabidopsis thaliana	NP_001189996.1	V-type proton ATPase subunit d2 [Arabidopsis thaliana]	1.0e-11	59%
RefSeq	Populus trichocarpa	XP_002324040.1	predicted protein [Populus trichocarpa]	1.0e-12	58%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZI9

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 61 - 305

Fln protein: ISVNVLISYGEVNAGQDFYEEEVKALSGI*TTVSLWCFFAYVRLREQEIRNLMWISECVAQ

Protein Length: 62

Fln nts: ATATCAGTCAATGTTCTAATATCTTATGGAGAAGTCAATGCTGGACAAGATTTCTATGAAGAGGAAGTGAAGGCTCTGTCTGGCATTTGAACAACAGTTTCACTATGGTGTTTCTTTGCATATGTGAGATTGCGGGAGCAGGAGATCAGGAATCTAATGTGGATTTCTGAATGTGTTGCTCAG

Fln Alignment:

F7JJN6E01CWHS8___ISYGEVNA-GQDFYEEEVKALS-GI*TTVSLWCFFAYVRLREQEIRNLMWISECVAQ
A9NZI9_______________ISYGESQMLDKFFYEEEVKRLCLAFEQQFHYGVFFAYVRLREQEIRNLMWVSECVAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain