SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58677

Length: 287 nt

UniGene Fasta

>sp_v3.0_unigene58677
ATGGGGACAGCTACATTCAAACGAGGGTTTCATAGGTTAACATAAGTTAAGTAGCAGGAGGAAAATGTTGAACTCAAAGACATTTCTCTGCCTTTGCCCTTGCCCTTCCAGGGCAGCTGTGAAGTACTTGTTAACTGTCATCTTGCTGGTCATCATTCAGTACATGGATATAGCAGCAGGAAAGCATTGGCAGACAACCAGGCATTACAAGTTCAATGTGAGGCAGAGTAATGTGACACGTCTTTGCAACACAAAACCTTTGATCACAGTGAATGGACAATATCCAG

Ace file of the UniGene sp_v3.0_unigene58677

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI2_PINTA	-	-	2.0e-33	93%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	93%
Sma3	Laccase	-	-	1.569e-07	-

Source	Gene names
Sma3	Lac5; Lac6;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002313424.1	predicted protein [Populus trichocarpa]	2.0e-12	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9AUI2

Fln msg: Distance to subject end: 517 aas, your sequence is shorter than subject: 74 - 591

Fln protein: MLNSKTFLCLCPCPSRAAVKYLLTVILLVIIQYMDIAAGKHWQTTRHYKFNVRQSNVTRLCNTKPLITVNGQYP

Protein Length: 75

Fln nts: ATGGGGACAGCTACATTCAAACGAGGGTTTCATAGGTTAACATAAGTTAAGTAGCAGGAGGAAA_-_ATGTTGAACTCAAAGACATTTCTCTGCCTTTGCCCTTGCCCTTCCAGGGCAGCTGTGAAGTACTTGTTAACTGTCATCTTGCTGGTCATCATTCAGTACATGGATATAGCAGCAGGAAAGCATTGGCAGACAACCAGGCATTACAAGTTCAATGTGAGGCAGAGTAATGTGACACGTCTTTGCAACACAAAACCTTTGATCACAGTGAATGGACAATATCCAG

Fln Alignment:

F5X2MQL01CBTJD___MLNSKTFLCLCPCPSRAAVKYLLTVILLVIIQYMDIAAGKHWQTTRHYKFNVRQSNVTRLCNTKPLITVNGQYP
Q9AUI2_______________MLNSKTLLRLCPCPSRAAVKYLLIVILLVIIQYLDTAAGKHWQTTRHYKFNVRQSNVTRLCNTKPLITVNGQYP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain