SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58662

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene58662
ATGGGGTGCAGGGTGCTGACTATCGCTCTATATTTACTGCTGTAGGTGCTATTTGGAGGACTGGTCTGGACATTTGAGAACAAACAAGAGCGAGGTTTTTCCAAGAGACTCTTATCTCCAGGGCTATTTCAATAACATATCAGAGTACCTTCGAGTTGGACCTCCGCTTTACT

Ace file of the UniGene sp_v3.0_unigene58662

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cholesterol transport protein n=1 Tax=Populus trichocarpa RepID=B9HPX9_POPTR	-	-	6.0e-07	92%
FL-Next	tr=Cholesterol transport protein; subsp. trichocarpa).	-	-	0.0	92%
Sma3	Cholesterol transport protein	-	-	5.586e-10	-

Source	Gene names
Sma3	GSVIVT00002883001; GSVIVT00036266001; POPTRDRAFT_721264; POPTRDRAFT_818865; RCOM_0512970; RCOM_1601160; T8D8.3; VITISV_038862;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hedgehog receptor activity	GO:0008158	Molecular Function	-
Sma3	cholesterol transport	GO:0030301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HPX9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 382 aas, your sequence is shorter than subject: 57 - 1223

Fln protein: WGAGC*LSLYIYCCRCYLEDWSGHLRTNKSEVFPRDSYLQGYFNNISEYLRVGPPLY

Protein Length: 58

Fln nts: ATGGGGTGCAGGGTGCTGACTATCGCTCTATATTTACTGCTGTAGGTGCTATTTGGAGGACTGGTCTGGACATTTGAGAACAAACAAGAGCGAGGTTTTTCCAAGAGACTCTTATCTCCAGGGCTATTTCAATAACATATCAGAGTACCTTCGAGTTGGACCTCCGCTTTACT

Fln Alignment:

F5X2MQL01CBX9P___VFPRDSYLQGYFNNISEYLRVGPPLY
B9HPX9_______________VLPRDSYLQGYFNNISEYLRIGPPLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain