SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58588

Length: 389 nt

UniGene Fasta

>sp_v3.0_unigene58588
TAAAGCAAATTGTGAAAAGGTTTTGAAGGAAGGGAATGTAATTAATGGAGATTGGCAAAGTGAGGGAAGCACTTGTTCTCTATGAAAAGATAATGGACGAAAATGGTGTTCCAGAGTGAACTCCATGGTCTTGCAGCCTTGCAATGGTCCGTCTGTTTGGACTCTATTGGAAGGTTGGATGAAGCTCGAATGATGTATGAGAAGCTTGGCTCACATCCAAATGTTCCAATACGAAAGAAAGCAAAGCACATTATTTTTAGTTTTCAGCATTCCATGAATTGCAGGCCATGGAAATGATGAAGTTTTCAGGTCGATCCACTCAGAATACAAGAAATTACGAAAATTATTTTCAAGTCATTTTCNGATGGATACCAATATAACAATACCTA

Ace file of the UniGene sp_v3.0_unigene58588

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	CM0216.540.nc protein	-	-	9.26e-06	-

Source	Gene names
Sma3	At2g38780; CM0216.540.nc; GSVIVT00005502001; OsI_19769; OsJ_18363; POPTRDRAFT_708533; RCOM_1453340;

Source	InterPros	Term	Type	e value	Identity
Sma3	Calmodulin-binding domain, plant	IPR012417	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G38780.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 23 species: Archae	1.0e-18	66%
RefSeq	Arabidopsis thaliana	NP_181412.2	uncharacterized protein [Arabidopsis thaliana]	2.0e-18	66%
RefSeq	Populus trichocarpa	XP_002297759.1	predicted protein [Populus trichocarpa]	9.0e-19	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM07

Fln msg: Overlapping hits, possible frame ERROR between 37 and 27, and overlapping frame ERROR between 101 and 100, your sequence is shorter than subject: 100 - 382

Fln protein: KANCEKVLxxxxx*LMEIGKVREALVLYEKIMxxxMVFQSELHGLAALQWSVCLDSIGRLDEARMMYEKLGSHPNVPIRKKAKHIIFSFQHSMNCRPWK*

Protein Length: 101

Fln nts: TAAAGCAAATTGTGAAAAGGTTTTGxxxxxxxxxxxxxxxTAATTAATGGAGATTGGCAAAGTGAGGGAAGCACTTGTTCTCTATGAAAAGATAATGGxxxxxxAAATGGTGTTCCAGAGTGAACTCCATGGTCTTGCAGCCTTGCAATGGTCCGTCTGTTTGGACTCTATTGGAAGGTTGGATGAAGCTCGAATGATGTATGAGAAGCTTGGCTCACATCCAAATGTTCCAATACGAAAGAAAGCAAAGCACATTATTTTTAGTTTTCAGCATTCCATGAATTGCAGGCCATGGAAATGATGAAGTTTTCAGGTCGATCCACTCAGAATACAAGAAATTACGAAAATTATTTTCAAGTCATTTTCaGATGGATACCAATATAACAATACCTA

Fln Alignment:

F5X2MQL01DWI2T___KANCEKVLxxxx*LMEIGKVREALVLYEKIMDxMVFQSELHGLAALQWSVCLDSIGRLDEARMMYEKLGSHPNVPIRKKAKHIIFSFQ
B8LM07_______________KANCEKVLxxxxELMEIGKLREALVLYEKIMExMVFQSELHGLAALQWSVCLDSISRSDEARIMYEKLRSHPNGSIRKKAKQIIFSFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain