SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58542

Length: 376 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene58542
CAGCCCGAGAAGAATTGGATGAACGATCCAGACGGACCTTTGGTGTACAAGGGATGGTATCATCTGTTCTATCAATCAATCCGGACTCGGCGATTTGGGGAACATAACATGGGGCCACGCTGTGTCGAAGGATCTGGTGCACTGGCTTACCTGGATTTGGCCATGGTTCCCGATCATTGGTACGACATCAATGGCGTCTGGACGGGCTCCGCTACGTTCTTGGCAGACGGGACCATTGCTATGCTCTATACGGGATCCACGAACGAATCCGTTCAAGTCCAGAACTTGGCCTTTCCAGAGAACGCCTCCGATCCGCTTCTCCAGAAATGGGTGAAATCGGAGGGCGAATCCTGTCAAAATAGTCCCGCCCGAGGGC

Ace file of the UniGene sp_v3.0_unigene58542 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Soluble acid invertase (Fragment) n=1 Tax=Pyrus communis RepID=Q59IU6_PYRCO	-	-	4.0e-36	61%
FL-Next	sp=Acid beta-fructofuranosidase 3, vacuolar; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Sma3	Vacuolar invertase	-	-	2.011e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sucrose:sucrose fructosyltransferase.	EC:2.4.1.99	-	2.303e-17	-
Sma3	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Galactose metabolism	00052	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	1-FFT; 1-FFT-A; 1-FFT-B; 1-SST; 1-sst; 6G-FFT; AI; AI-2; AIV-1; At1g12240; At1g62660; At1g62660/T3P18.21; BIN44; Beta-fruct; CIN1; CUAI1; CitINV1; CitINV2; Cs-bFruct1; Cs-bFruct2; FT1; FT2; GSVIVT00004764001; GSVIVT00029907001; H0502G05.3; INV*DC4; INV1;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-fructofuranosidase activity	GO:0004564	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	6G-fructosyltransferase activity	GO:0033841	Molecular Function	-
Sma3	1,2-beta-fructan 1F-fructosyltransferase activity	GO:0047207	Molecular Function	-
Sma3	sucrose 1F-fructosyltransferase activity	GO:0050306	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62660.1	Glycosyl hydrolases family 32 protein chr1:23199949-23203515 FORWARD LENGTH=648	8.40779e-45	64%
RefSeq	Arabidopsis thaliana	NP_564798.1	beta-fructofuranosidase [Arabidopsis thaliana]	9.80909e-45	64%
RefSeq	Populus trichocarpa	XP_002303584.1	predicted protein [Populus trichocarpa]	8.00001e-42	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q43348

Fln msg: Distance to subject end: 411 aas, your sequence is shorter than subject: 125 - 648

Fln protein: QPEKNWMNDPDGPLVYKGWYHLFYQSIRTRRFGEHNMGPRCVEGSGALAYLDLAMVPDHWYDINGVWTGSATFLADGTIAMLYTGSTNESVQVQNLAFPENASDPLLQKWVKSEGESCQNSPARG

Protein Length: 126

Fln nts: CAGCCCGAGAAGAATTGGATGAACGATCCAGACGGACCTTTGGTGTACAAGGGATGGTATCATCTGTTCTATCAATCAATCCGGACTCGGCGATTTGGGGAACATAACATGGGGCCACGCTGTGTCGAAGGATCTGGTGCACTGGCTTACCTGGATTTGGCCATGGTTCCCGATCATTGGTACGACATCAATGGCGTCTGGACGGGCTCCGCTACGTTCTTGGCAGACGGGACCATTGCTATGCTCTATACGGGATCCACGAACGAATCCGTTCAAGTCCAGAACTTGGCCTTTCCAGAGAACGCCTCCGATCCGCTTCTCCAGAAATGGGTGAAATCGGAGGGCGAATCCTGTCAAAATAGTCCCGCCCGAGGGC

Fln Alignment:

F585NNT02GGTCC___QPEKNWMNDPDGPLVYKGWYHLFYQ-SIRTRRFGEHNMGPRCVEGSGALAYLDLAMVPDHWYDINGVWTGSATFLADGTIAMLYTGSTNESVQVQNLAFPENASDPLLQKWVKSEG
Q43348_______________QPEKNWMNDPNGPLFYKGWYHFFYQYNPNAAVWGDIVWGHAVSKDLIHWLYLPIAMVPDQWYDANGVWTGSATFLDDGSIVMLYTGSTDEFVQVQNLAYPEDPSDPLLLKWVKFSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain