SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58532

Length: 345 nt

UniGene Fasta

>sp_v3.0_unigene58532
ATGGGGATAACATGGGGCCACGCTGTGTCGAAGGATCTGGTGCACTGGCTTTACCTGGATTTGGCCATGGTTCCCGACCATTGGTACGACATCAATGGCGTCTGGACGGGCTCCGCTACGTTCTTGGCAGACGGGACCATTGCTATGCTCTATACGGGATCCACGAACGAATCCGTTCAAGTCCAGAACTTGGCCTTTCCAGAGAACGCCTCCGATCCGCTTCTCCAGAAATGGGTGAAATCGGAGGCGAATCCTGTCATAGTCCCGCCCGAGGGCATAGGGCTGCGGTATGATTATGGAAAATATTATGCTTCCAAGTCTTTTTACGATCCAGTGAAGGAGAGA

Ace file of the UniGene sp_v3.0_unigene58532

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta-fructosidase [Arabidopsis thaliana]	-	-	2.0e-38	69%
FL-Next	sp=Acid beta-fructofuranosidase 3, vacuolar; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Sma3	Vacuolar invertase	-	-	5.351e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.4.1.10-	-	7.874e-24	-
Sma3	6(G)-fructosyltransferase.	EC:2.4.1.243	-	6.493e-07	-
Sma3	Sucrose:sucrose fructosyltransferase.	EC:2.4.1.99	-	2.501e-16	-
Sma3	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		0.0	%
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3		EC:3.2.1.8-	-	2.09e-09	-

Source	Gene names
Sma3	1-FEH; 1-FFT; 1-FFT-A; 1-FFT-B; 1-SST; 1-feh; 1-feh IIa; 1-feh IIb; 1-sst; 6-(S/F)FT; 6-FEH; 6-SFT; 6G-FFT; 6ft; AI; AI-2; AIV-1; At1g12240; At1g62660; At1g62660/T3P18.21; At5g11920; BFRUCT1; BIN44; Beta-fruct; CIN1; CIN2; CUAI1; CWINV6; CitINV1; CitINV2;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-fructofuranosidase activity	GO:0004564	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	6G-fructosyltransferase activity	GO:0033841	Molecular Function	-
Sma3	fructan beta-(2,6)-fructosidase activity	GO:0033949	Molecular Function	-
Sma3	1,2-beta-fructan 1F-fructosyltransferase activity	GO:0047207	Molecular Function	-
Sma3	sucrose 1F-fructosyltransferase activity	GO:0050306	Molecular Function	-
Sma3	fructan beta-fructosidase activity	GO:0051669	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62660.1	Glycosyl hydrolases family 32 protein chr1:23199949-23203515 FORWARD LENGTH=648	0.0	69%
RefSeq	Arabidopsis thaliana	NP_564798.1	beta-fructofuranosidase [Arabidopsis thaliana]	0.0	69%
RefSeq	Populus trichocarpa	XP_002321831.1	predicted protein [Populus trichocarpa]	1.4013e-45	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q43348

Fln msg: Distance to subject end: 399 aas, your sequence is shorter than subject: 115 - 648

Fln protein: MGITWGHAVSKDLVHWLYLDLAMVPDHWYDINGVWTGSATFLADGTIAMLYTGSTNESVQVQNLAFPENASDPLLQKWVKSEANPVIVPPEGIGLRYDYGKYYASKSFYDPVKER

Protein Length: 116

Fln nts: ATGGGGATAACATGGGGCCACGCTGTGTCGAAGGATCTGGTGCACTGGCTTTACCTGGATTTGGCCATGGTTCCCGACCATTGGTACGACATCAATGGCGTCTGGACGGGCTCCGCTACGTTCTTGGCAGACGGGACCATTGCTATGCTCTATACGGGATCCACGAACGAATCCGTTCAAGTCCAGAACTTGGCCTTTCCAGAGAACGCCTCCGATCCGCTTCTCCAGAAATGGGTGAAATCGGAGGCGAATCCTGTCATAGTCCCGCCCGAGGGCATAGGGCTGCGGTATGATTATGGAAAATATTATGCTTCCAAGTCTTTTTACGATCCAGTGAAGGAGAGA

Fln Alignment:

F585NNT02I6XFK___ITWGHAVSKDLVHWLYLDLAMVPDHWYDINGVWTGSATFLADGTIAMLYTGSTNESVQVQNLAFPENASDPLLQKWVKSEANPVIVPPEGIGLRYDYGKYYASKSFYDP
Q43348_______________IVWGHAVSKDLIHWLYLPIAMVPDQWYDANGVWTGSATFLDDGSIVMLYTGSTDEFVQVQNLAYPEDPSDPLLLKWVKFSGNPVLVPPPGIG----------AKDFRDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain