UniGene Name: sp_v3.0_unigene58520
Length: 201 nt
UniGene Fasta |
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>sp_v3.0_unigene58520
A |
Ace file of the UniGene sp_v3.0_unigene58520 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Chalcone synthase (Fragment) n=4 Tax=Pseudotsuga RepID=C6F7B7_PSEMZ | - | - | 3.0e-28 | 93% |
FL-Next | tr=Chalcone synthase; Pinus pinaster (Maritime pine). | - | - | 0.0 | 100% |
Sma3 | Chalcone synthase | - | - | 0.0 | - |
Source | ECs | Term | Type | e value | Identity |
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Sma3 | Naringenin-chalcone synthase. | EC:2.3.1.74 | - | 0.0 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Flavonoid biosynthesis | 00941 | 0.0 | % | |
Sma3 | Biosynthesis of phenylpropanoids | 01061 | 0.0 | % | |
Sma3 | Metabolic pathways | 01100 | 0.0 | % | |
Sma3 | Biosynthesis of secondary metabolites | 01110 | 0.0 | % |
Source | Gene names |
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Sma3 | C2; CHS; CHS-A; CHS-D; CHS-DII; CHS-DIII; CHS-DIV; CHS-E; CHS-LF1; CHS-LF2; CHS-LF3; CHS-LF4; CHS-P; CHS1; CHS15; CHS2; CHS3; CHS4; CHS4-1; CHS4-2; CHS5; CHS6; CHS6-4; CHS7; CHS9; CHSA; CHSD; CHSE; CHSI; CHSII; CHSJ; CSF7; EgCHS-A; EgCHS-B; GSVIVT00009242 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | GO:0008415 | Molecular Function | 0.0 | - | |
Sma3 | naringenin-chalcone synthase activity | GO:0016210 | Molecular Function | 0.0 | - |
Sma3 | response to stress | GO:0006950 | Biological Process | 0.0 | - |
Sma3 | metabolic process | GO:0008152 | Biological Process | 0.0 | - |
Sma3 | biosynthetic process | GO:0009058 | Biological Process | 0.0 | - |
Sma3 | flavonoid biosynthetic process | GO:0009813 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Chalcone/stilbene synthase, N-terminal | IPR001099 | - | 0.0 | - |
Sma3 | Polyketide synthase, type III | IPR011141 | - | 0.0 | - |
Sma3 | Chalcone/stilbene synthase, C-terminal | IPR012328 | - | 0.0 | - |
Sma3 | Thiolase-like, subgroup | IPR016038 | - | 0.0 | - |
Sma3 | Chalcone/stilbene synthase, active site | IPR018088 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT5G13930.1 | CHS, TT4, ATCHS Chalcone and stilbene synthase family protein chr5:4488762-4490035 FORWARD LENGTH=395 | 3.0e-25 | 72% |
RefSeq | Arabidopsis thaliana | NP_196897.1 | chalcone synthase [Arabidopsis thaliana] | 4.0e-25 | 72% |
RefSeq | Populus trichocarpa | XP_002299282.1 | chalcone synthase [Populus trichocarpa] | 9.0e-28 | 78% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: Q8GUU5
Fln msg: Distance to subject end: 22 aas, your sequence is shorter than subject: 67 - 395
Fln protein:
M
Protein Length:
68
Fln nts:
A
Fln Alignment:
F585NNT02IRXVJ___PGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSHQNGCSTTGEGLDVG
Q8GUU5_______________PGGPAILDQVEAKLNLDPKKLRATRQVLSDYGNMSSACVHFILDEMRKSSHQNGCSTTGEGLDVG
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain