SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58496

Length: 420 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene58496
AGGCAGAGCGAATTCTAATGCAGAGCATCAGGTTTTCAGCTCCACAGAAGGCGAATTTCTGTCTCCGGAATGTACCCGGCTCGATTCCCTGACAGTCGCCGAGGATTTGGTGAAAGACGCTGACCGTTTTCTCGCAGTCATGGACGCGATTTCTAACTGTGATTTTCTGAGAAGTGCGAAGTCTCCTCCGTCGGCTTGCAAGTGGGAGGAGCTGCCATGGCTGAAAGGCCAAGGGTTATTACAGCCTCGCTGCTTTCGTGGCCAACAAGCTGGAGCTCTCGTTGAGGCTTTCGTGGCTTCATTCTCACGGCAAGAAACGGAGTTCCAGGATGAATTCTATGGCGAATAGCCATGAAGTGCACAAAAATGGACGGGATTTGGCAGGAATTGCTTCAAATGTGTTCTGGAGGAAGAAAGCCT

Ace file of the UniGene sp_v3.0_unigene58496 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleotidyltransferase-like [Oryza sativa Japonica Group]	-	-	3.0e-12	40%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	44%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00060.1	MEE44 Nucleotidyltransferase family protein chr4:21437-27996 FORWARD LENGTH=1481	4.0e-11	46%
RefSeq	Arabidopsis thaliana	NP_191917.3	Nucleotidyltransferase family protein [Arabidopsis thaliana]	5.0e-11	46%
RefSeq	Populus trichocarpa	XP_002320705.1	predicted protein [Populus trichocarpa]	5.0e-20	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5B8A8

Fln msg: Overlapping hits, possible frame ERROR between 235 and 225, Distance to subject end: 1202 aas, your sequence is shorter than subject: 140 - 1500

Fln protein: GRANSNAEHQVFSSTEGEFLSPECTRLDSLTVAEDLVKDADRFLAVMDAISNCDFLRSAKSPPSACKWEELPWLxxxxxYYSLAAFVANKLELSLRLSWLHSHGKKRSSRMNSMANSHEVHKNGRDLAGIASNVFWRKKA

Protein Length: 141

Fln nts: AGGCAGAGCGAATTCTAATGCAGAGCATCAGGTTTTCAGCTCCACAGAAGGCGAATTTCTGTCTCCGGAATGTACCCGGCTCGATTCCCTGACAGTCGCCGAGGATTTGGTGAAAGACGCTGACCGTTTTCTCGCAGTCATGGACGCGATTTCTAACTGTGATTTTCTGAGAAGTGCGAAGTCTCCTCCGTCGGCTTGCAAGTGGGAGGAGCTGCCATGGCTGxxxxxxxxxxxxxxxTATTACAGCCTCGCTGCTTTCGTGGCCAACAAGCTGGAGCTCTCGTTGAGGCTTTCGTGGCTTCATTCTCACGGCAAGAAACGGAGTTCCAGGATGAATTCTATGGCGAATAGCCATGAAGTGCACAAAAATGGACGGGATTTGGCAGGAATTGCTTCAAATGTGTTCTGGAGGAAGAAAGCCT

Fln Alignment:

F585NNT02IAEP1___NAEHQVFSSTEGEFL---SPECTRLDSLTVAEDLVKDADRFLAVMDAISNCDFLRSAKSPPSACKWEELPWLxxxxYYSLAAFVANKLELSLRLSWLH--SHGKKRSSRMNSMANSHEVHKNGRDLAGIASNVFWRKK
A5B8A8_______________NDSVRLFGSKEGERVEDCSCSASFLDSLTVCEEFVSNVDRFVAAMDSVSNGGFLRGEESGLGS-DWVELEWLxxxxYYSIESFVANRLEVALRLAWFNCGNNGKKRGVKLKEKVN----------VAGIAANVFWRKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain