|
||||||
|
UniGene Name: sp_v3.0_unigene58482
Length: 203 nt
 UniGene Fasta
|
|---|
| >sp_v3.0_unigene58482
C |
|
Ace file of the UniGene sp_v3.0_unigene58482
|
|---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
| Annotations |
|---|
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Ras-related protein RABA2a [Arabidopsis thaliana] sp|O04486.1|RAA2A_ARATH RecName: Full=Ras-related protein RABA2a; Short=AtRABA2a; AltName: Full=Ras-related protein Rab11C; Short=AtRab11C; Flags: Precursor gb|AAB60720.1| Strong similarity to A. thaliana | - | - | 2.0e-14 | 93% |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 100% |
| Sma3 | Ras-related protein Rab11C | - | - | 1.43e-12 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Sphingomyelin phosphodiesterase. | EC:3.1.4.12 | - | 1.158e-08 | - |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Sphingolipid metabolism | 00600 | 1.158e-08 | % | |
| Sma3 | Metabolic pathways | 01100 | 1.158e-08 | % |
| Source | Gene names |
|---|---|
| Sma3 | ARA-2; AT1G06400; AT4g18430; AT4g18800; At1g06400; At1g09630; At1g16920; At1g18200; At1g28550; At2g33870; At3g15060; At3g15060/K15M2_21; At3g46830; At4g18430; At4g18800; At5g45750; At5g59150; At5g60860; At5g60860/mae1_110; B1130G10.13; CHLREDRAFT_195519; |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | endosome | GO:0005768 | Cellular Component | 0.0 | - |
| Sma3 | vacuole | GO:0005773 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | cell plate | GO:0009504 | Cellular Component | 0.0 | - |
| Sma3 | GTP binding | GO:0005525 | Molecular Function | 0.0 | - |
| Sma3 | small GTPase mediated signal transduction | GO:0007264 | Biological Process | 0.0 | - |
| Sma3 | protein transport | GO:0015031 | Biological Process | 0.0 | - |
| Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Small GTPase superfamily | IPR001806 | - | 0.0 | - |
| Sma3 | RNA polymerase sigma factor 54, interaction | IPR002078 | - | 0.0 | - |
| Sma3 | Small GTPase superfamily, Rab type | IPR003579 | - | 0.0 | - |
| Sma3 | Small GTP-binding protein domain | IPR005225 | - | 0.0 | - |
| Sma3 | GCK | IPR012891 | - | 0.0 | - |
| Sma3 | IPR013753 | - | 0.0 | - | |
| Sma3 | IPR015595 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT1G09630.1 | ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A, RAB11c RAB GTPase 11C chr1:3118350-3119571 REVERSE LENGTH=217 | 1.0e-16 | 93% |
| RefSeq | Arabidopsis thaliana | NP_172434.1 | Ras-related protein RABA2a [Arabidopsis thaliana] | 1.0e-16 | 93% |
| RefSeq | Populus trichocarpa | XP_002328719.1 | predicted protein [Populus trichocarpa] | 9.0e-17 | 93% |
| Full-Lengther Next Prediction |
|---|
Fln status: Putative N-terminus
Fln database: coniferopsida.fasta
Fln subject: B8LR10
Fln msg: Separated hits, possible frame ERROR between 98 and 100, and possible frame ERROR between 147 and 149, Distance to subject end: 145 aas, atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning, your sequence is shorter than subject: 68 - 213
Fln protein:
R
Protein Length:
69
Fln nts:
C
Fln Alignment:
F5V9AAZ01CO23W___RRTDDEYDYLFKVVLIGDSGVGKSNLLSRFTRxNEFCLESKSTIGVEFAxTRTVQVEGKT
B8LR10_______________RRTDDEYDYLFKVVLIGDSGVGKSNLLSRFTRxNEFCLESKSTIGVEFAxTRTVQVEGKT
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
