SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58442

Length: 227 nt

UniGene Fasta

>sp_v3.0_unigene58442
AGTGAAATTATGACTTATTCTGCAACACTTATAATAATATCTGACTTCAAACTTGATTGTTGCAGGCGGACTACGGAGATGGTACAACCCACCTTGGTATTCAGAAAATGTTATACCGTCTTCTCCATATGACTCTTTGGTTTTAAGACGGGCATTTGAGAAAGTATAGTCCATTATCATAATTGTCCTGCTTTGTCATATCGGTTCTACCCTTGACGTGCTTGTAT

Ace file of the UniGene sp_v3.0_unigene58442

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Asparagine synthetase n=3 Tax=Pinaceae RepID=E7EAQ2_PINPS	-	-	9.0e-13	100%
FL-Next	sp=Asparagine synthetase; Pinus pinaster (Maritime pine).	-	-	0.0	100%
Sma3	Asparagine synthetase	-	-	6.382e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Asparagine synthase (glutamine-hydrolyzing).	EC:6.3.5.4	-	2.677e-24	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	2.677e-24	%
Sma3	Nitrogen metabolism	00910	2.677e-24	%
Sma3	Metabolic pathways	01100	2.677e-24	%
Sma3	Biosynthesis of secondary metabolites	01110	2.677e-24	%

Source	Gene names
Sma3	117M18_15; AS; AS1; ASN1; ASN2; ASN3; AsAS1; AsAS2; At5g10240; At5g65010; F18D22_10; GSVIVT00005225001; GSVIVT00012863001; GSVIVT00024074001; HAS2; PHYPADRAFT_173106; POPTRDRAFT_207428; POPTRDRAFT_722643; POPTRDRAFT_829702; RCOM_0212760; RCOM_0479760; T31

Source	GOs	Term	Type	Identity
Sma3	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	-
Sma3	asparagine biosynthetic process	GO:0006529	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Asparagine synthase, glutamine-hydrolyzing	IPR006426	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G65010.2	-	3.0e-12	81%
RefSeq	Arabidopsis thaliana	NP_851272.1	asparagine synthetase 2 [Arabidopsis thaliana]	4.0e-12	81%
RefSeq	Populus trichocarpa	XP_002313246.1	predicted protein [Populus trichocarpa]	4.0e-12	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E7EAQ2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 355 aas, your sequence is shorter than subject: 56 - 593

Fln protein: VKL*LILQHL**YLTSNLIVAGGLRRWYNPPWYSENVIPSSPYDSLVLRRAFEKV*

Protein Length: 57

Fln nts: AGTGAAATTATGACTTATTCTGCAACACTTATAATAATATCTGACTTCAAACTTGATTGTTGCAGGCGGACTACGGAGATGGTACAACCCACCTTGGTATTCAGAAAATGTTATACCGTCTTCTCCATATGACTCTTTGGTTTTAAGACGGGCATTTGAGAAAGTATAGTCCATTATCATAATTGTCCTGCTTTGTCATATCGGTTCTACCCTTGACGTGCTTGTAT

Fln Alignment:

F585NNT02HDKU0___GGLRRWYNPPWYSENVIPSSPYDSLVLRRAFEK
E7EAQ2_______________GGLRRWYNPPWYSENVIPSSPYDSLVLRRAFEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain