SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58377

Length: 468 nt

UniGene Fasta

>sp_v3.0_unigene58377
TGGAACAGAGCCTTGGAAGCTCCCAGAAGACGAGTTTCTTTCTCCGCGAGACAGCGAAGGACACGGAACTCATACTTTATCTACAGCAGCGGGGAGTTTTGTGAAAAACGCAAGTATATATGGATATGCACGAGGGACTGCTAGAGGAGGAGCTCCTAATGCAAGAGTTGCAGCTTACAAAGCTTGTTGGGCTGGCCACGGATGCTCCGACGCAGATATTCTTGCAGCATTGGATGCAGGGATTCAAGATGGCGTTGATGTGTTCTCTGTTTCTATTGGATATGACCCTCCTCTGACAGATTACTTTCAAGATGCAGTTTCCATTGGATCCTTCCATGCAGTCCAGAAAGGAAAGGTAGTGGTCTGTTCCGCTGGAAATGCTGGTCCAACACCGGCTACAGTTACAAATGTGGCACCGTGGATAATAACTGTGGGAGCAAGCACCATTGATAGACTAATCCTTGCAAA

Ace file of the UniGene sp_v3.0_unigene58377

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase_S8 domain containing protein	-	-	7.0e-15	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Xylem serine proteinase 1, putative	-	-	1.19194e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.188e-08	-
Sma3	Cucumisin.	EC:3.4.21.25	-	0.0	-

Source	Gene names
Sma3	A43; AIR3; ARA12; ASP48; AT3G14067; AT4g10510; AT4g10520; AT4g10530; AT4g10550; AT4g26330; AT4g34980; At1g32970; At1g66220; At2g04160; At2g05920; At3g14067; At3g14240; At4g00230; At4g10510; At4g10520; At4g10530; At4g10550; At4g26330; At4g34980; At5g03620;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	GMP synthase (glutamine-hydrolyzing) activity	GO:0003922	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	GMP biosynthetic process	GO:0006177	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-
Sma3	mucilage metabolic process involved seed coat development	GO:0048359	Biological Process	-
Sma3	mucilage extrusion from seed coat	GO:0080001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3		IPR000991	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR011702	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04160.1	AIR3 Subtilisin-like serine endopeptidase family protein chr2:1401450-1407694 REVERSE LENGTH=772	2.0e-39	65%
RefSeq	Arabidopsis thaliana	NP_565309.2	Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	2.0e-39	65%
RefSeq	Populus trichocarpa	XP_002305456.1	predicted protein [Populus trichocarpa]	1.4013e-45	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: Distance to subject end: 338 aas, your sequence is shorter than subject: 155 - 690

Fln protein: GTEPWKLPEDEFLSPRDSEGHGTHTLSTAAGSFVKNASIYGYARGTARGGAPNARVAAYKACWAGHGCSDADILAALDAGIQDGVDVFSVSIGYDPPLTDYFQDAVSIGSFHAVQKGKVVVCSAGNAGPTPATVTNVAPWIITVGASTIDRLILA

Protein Length: 156

Fln nts: TGGAACAGAGCCTTGGAAGCTCCCAGAAGACGAGTTTCTTTCTCCGCGAGACAGCGAAGGACACGGAACTCATACTTTATCTACAGCAGCGGGGAGTTTTGTGAAAAACGCAAGTATATATGGATATGCACGAGGGACTGCTAGAGGAGGAGCTCCTAATGCAAGAGTTGCAGCTTACAAAGCTTGTTGGGCTGGCCACGGATGCTCCGACGCAGATATTCTTGCAGCATTGGATGCAGGGATTCAAGATGGCGTTGATGTGTTCTCTGTTTCTATTGGATATGACCCTCCTCTGACAGATTACTTTCAAGATGCAGTTTCCATTGGATCCTTCCATGCAGTCCAGAAAGGAAAGGTAGTGGTCTGTTCCGCTGGAAATGCTGGTCCAACACCGGCTACAGTTACAAATGTGGCACCGTGGATAATAACTGTGGGAGCAAGCACCATTGATAGACTAATCCTTGCAAA

Fln Alignment:

F585NNT02IYWB1___EFLSPRDSEGHGTHTLSTAAGSFVKNASIXXXXXXXXXXXXPNARVAAYKACWAGHGCSXXXXXXXXXXXXXXGVDVFSVSIGYDPPLTDYFQDAVSIGSFHAVQKGKVVVCSAGNAGPTPATVTNVAPWIITVGASTIDR
C0PPS1_______________EFRSPRDQDGHGTHTASTAAGAVVLKADLVGYAKGTARGMATRARIAAYKVCWVG-GCFSTDILAALDKAVADGVNVLSLSLGGG--LEPYYRDSISLGTFGAMEKGIFVSCSAGNGGPDPISLSNVAPWIATIGAGTLDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain