SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58348

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene58348
GAGGAGATTAAGAATGGTGAGGGGAAAAATCCAGATGAAGAGAATTGAGAATACCGCCAGCAGGCAGGTTACATTTTCCAAGCGTAGAAACGGATTGCTGAAGAAAGCTTACGAGCTCTCGGTTCTCTGCGATGCAGAAGTTGGAGTTATGATTTTCTCGCCAGGAGGAAAGCTCTATGAATTCGCCAATCCCAGGATGTGGTCACAGGGTCTTGGCTTCAACTTGTCCAACAA

Ace file of the UniGene sp_v3.0_unigene58348

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative MADS domain transcription factor GGM1 n=1 Tax=Gnetum gnemon RepID=Q9XGK6_GNEGN	-	-	2.0e-23	87%
FL-Next	tr=DAL3 protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	81%
Sma3	MADS-box protein	-	-	3.141e-19	-

Source	Gene names
Sma3	AG; AG-1; AG-2; AG1; AG2; AGAMOUS; AGL; AGL1; AGL13; AGL14; AGL19; AGL20; AGL21; AGL26; AGL29; AGL38; AGL5; AGL6; AGL7; AT5G62165; AVAG1; AVAG2; At2g42830; At2g45660; At3g58780; At3g61120; At4g09960; At4g11880; At4g22950; At5g62165; CAG2; CAG3; CMADS2; CM

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45660.1	AGL20, SOC1, ATSOC1 AGAMOUS-like 20 chr2:18807799-18810193 REVERSE LENGTH=214	2.0e-28	82%
RefSeq	Arabidopsis thaliana	NP_182090.1	MADS-box protein SOC1 [Arabidopsis thaliana]	3.0e-28	82%
RefSeq	Populus trichocarpa	XP_002320747.1	MIKC mads-box transcription factor PTM5 [Populus trichocarpa]	2.0e-27	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40767

Fln msg: Distance to subject end: 114 aas, atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 73 - 203

Fln protein: MVRGKIQMKRIENTASRQVTFSKRRNGLLKKAYELSVLCDAEVGVMIFSPGGKLYEFANPRMWSQGLGFNLSN

Protein Length: 74

Fln nts: GAGGAGATTAAGA_-_ATGGTGAGGGGAAAAATCCAGATGAAGAGAATTGAGAATACCGCCAGCAGGCAGGTTACATTTTCCAAGCGTAGAAACGGATTGCTGAAGAAAGCTTACGAGCTCTCGGTTCTCTGCGATGCAGAAGTTGGAGTTATGATTTTCTCGCCAGGAGGAAAGCTCTATGAATTCGCCAATCCCAGGATGTGGTCACAGGGTCTTGGCTTCAACTTGTCCAACAA

Fln Alignment:

F585NNT02FV9TR___RRLRMVRGKIQMKRIENTASRQVTFSKRRNGLLKKAYELSVLCDAEVGVMIFSPGGKLYEFANPRM
Q40767_______________QKTRMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSPRGKLYEFANPSM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain