SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58287

Length: 439 nt

UniGene Fasta

>sp_v3.0_unigene58287
GAATATATTGATGATTTCCTCAGTTTAGTTTCTTTTGTTGATGAGGACTGGAATAAGCTACATTCAAATGCACTTACTTCCAAACTTGAATATGGTTTTCTGGCGAAGCCACAAAGAACGAAAGTATACAATAGGATATTGTCAATTCTGAAGGATGGAATTGTAGTAGGCAAGAAAAAGTTTGAATTCCTAGCATTTTCAGCCAGTCAGTTGAGGGAAAATTCTCTCTGGATGTTTTCTCCAAATGACAAAGTCACTGCTGACAGCATCAGAAAGTGGATGGGTGACTTTGACAATATCAGGAATGTAGCCAAGTGTGCAGCAAGAATGGGGCAATCATTTAGTTCTTCGAGGCAGACATCAAATAGTTCAAGAGCATGAGGTCTCATTATCCTGATATTGAGGTCTCTACTGATGGCATCAAGTACTGTTTTCAGAT

Ace file of the UniGene sp_v3.0_unigene58287

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IEP4_POPTR	-	-	9.0e-38	62%
FL-Next	sp=RNA-dependent RNA polymerase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Sma3	RNA-directed RNA polymerase	-	-	8.911e-17	-

Source	Gene names
Sma3	AT4g11130; At1g14790; At4g11130; F2P3.11; GSVIVT00016129001; GSVIVT00030600001; GSVIVT00030602001; OSJNBb0048E02.13; Os02g0736200; OsI_08849; OsI_16234; OsJ_08301; PHYPADRAFT_219654; POPTRDRAFT_231683; POPTRDRAFT_564678; POPTRDRAFT_575133; POPTRDRAFT_8206

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA-directed RNA polymerase activity	GO:0003968	Molecular Function	-
Sma3	cell-cell signaling	GO:0007267	Biological Process	-
Sma3	long-distance posttranscriptional gene silencing	GO:0010495	Biological Process	-
Sma3	production of siRNA involved in RNA interference	GO:0030422	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11130.1	RDR2, SMD1 RNA-dependent RNA polymerase 2 chr4:6780522-6784390 FORWARD LENGTH=1133	3.0e-40	60%
RefSeq	Arabidopsis thaliana	NP_192851.1	RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]	4.00001e-40	60%
RefSeq	Populus trichocarpa	XP_002321582.1	rna-dependent RNA polymerase [Populus trichocarpa]	1.99993e-41	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O82504

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 579 aas, your sequence is shorter than subject: 127 - 1133

Fln protein: EYIDDFLSLVSFVDEDWNKLHSNALTSKLEYGFLAKPQRTKVYNRILSILKDGIVVGKKKFEFLAFSASQLRENSLWMFSPNDKVTADSIRKWMGDFDNIRNVAKCAARMGQSFSSSRQTSNSSRA*

Protein Length: 128

Fln nts: GAATATATTGATGATTTCCTCAGTTTAGTTTCTTTTGTTGATGAGGACTGGAATAAGCTACATTCAAATGCACTTACTTCCAAACTTGAATATGGTTTTCTGGCGAAGCCACAAAGAACGAAAGTATACAATAGGATATTGTCAATTCTGAAGGATGGAATTGTAGTAGGCAAGAAAAAGTTTGAATTCCTAGCATTTTCAGCCAGTCAGTTGAGGGAAAATTCTCTCTGGATGTTTTCTCCAAATGACAAAGTCACTGCTGACAGCATCAGAAAGTGGATGGGTGACTTTGACAATATCAGGAATGTAGCCAAGTGTGCAGCAAGAATGGGGCAATCATTTAGTTCTTCGAGGCAGACATCAAATAGTTCAAGAGCATGAGGTCTCATTATCCTGATATTGAGGTCTCTACTGATGGCATCAAGTACTGTTTTCAGAT

Fln Alignment:

F585NNT02I29GA___EYIDDFLSLVSFVDEDWNKLHSNALTSKLEYGFLAKPQRTKVYNRILSILKDGIVVGKKKFEFLAFSASQLRENSLWMFSPNDKVTADSIRKWMGDFDNIRNVAKCAARMGQ
O82504_______________EHVSDFMR-VTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain