SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58236

Length: 498 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene58236
CGTACCCTCTCATTGTTATGGAGGACGCTGATATTGATGAAGCTGTGGAAATTGCCCATCTAGCAGTATTTACCAACATGGGGCAAATCTGCGTGGCAGGTTCACGGGTGTTTGTTCAAGAAAGCATTTATGATGAATTTGTGAAGAAAGCAGTGGAAAGAGCAAAGAAGCAAGTGGTCGGAGACCCAGAAGGCAGAAGCTTCTAATACCAGATACCTTATTACCCACAGAGAGAATCACACAATAGGCTTGGGGAGTTTGAACAGTTGGATCTCAAGGTTTCAGAATCCATTATACGATGGGCTTCGTGTACTCGGTTATCTGGGTGCACCTCATTTCAATCTCCATTAGTGTGTTGACAGCTTCTGCTAACATCATCAGTGTACCATTGGAAGCCAAAAGCATAGCTTCAAAAACCTAATGATTATCTTTTCTTTTGAAGGGCTGTTTGATGGAGCTTTAACCAGACTTTTGGCAGTCTGTTACTCCTGAGAATTA

Ace file of the UniGene sp_v3.0_unigene58236 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2) (ALDH1) (ALDH-E2) n=1 Tax=Ciona intestinalis RepID=UPI000180BF08	-	-	1.0e-17	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Aldehyde dehydrogenase	-	-	1.811e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	3.156e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		3.156e-17	%
Sma3	Pentose and glucuronate interconversions	00040		3.156e-17	%
Sma3	Ascorbate and aldarate metabolism	00053		3.156e-17	%
Sma3	Fatty acid metabolism	00071		3.156e-17	%
Sma3	Valine, leucine and isoleucine degradation	00280		3.156e-17	%
Sma3	Lysine degradation	00310		3.156e-17	%
Sma3	Arginine and proline metabolism	00330		3.156e-17	%
Sma3	Histidine metabolism	00340		3.156e-17	%
Sma3	Tryptophan metabolism	00380		3.156e-17	%
Sma3	beta-Alanine metabolism	00410		3.156e-17	%
Sma3	Glycerolipid metabolism	00561		3.156e-17	%
Sma3	Pyruvate metabolism	00620		3.156e-17	%
Sma3	Chloroalkane and chloroalkene degradation	00625		3.156e-17	%
Sma3	Propanoate metabolism	00640		3.156e-17	%
Sma3	Limonene and pinene degradation	00903		3.156e-17	%
Sma3	Metabolic pathways	01100		3.156e-17	%
Sma3	Biosynthesis of secondary metabolites	01110		3.156e-17	%
Sma3	Retinal dehydrogenase.	EC:1.2.1.36	-	2.424e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Retinol metabolism	00830		2.424e-18	%
Sma3	Metabolic pathways	01100		2.424e-18	%

Source	Gene names
Sma3	ALDH; ALDH1a; ALDH2; ALDH2A; ALDH2B; ALDH2B4; ALDH2B7; ALDH2C4; ALDH2a; ALDH2b; ALDH3; Aldh; Aldh 2A; Aldh1; Aldh2a; Aldh2b; At1g23800; At3g24503; At3g48000; CHLREDRAFT_135609; F5O8.33; F5O8.35; GSVIVT00016121001; GSVIVT00020768001; GSVIVT00028841001; GSV

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	-
Sma3	aldehyde dehydrogenase [NAD(P)+] activity	GO:0004030	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	coniferyl-aldehyde dehydrogenase activity	GO:0050269	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48000.1	ALDH2B4, ALDH2, ALDH2A aldehyde dehydrogenase 2B4 chr3:17717082-17719843 REVERSE LENGTH=538	3.0e-20	67%
RefSeq	Arabidopsis thaliana	NP_190383.1	aldehyde dehydrogenase 2B4 [Arabidopsis thaliana]	4.0e-20	67%
RefSeq	Populus trichocarpa	XP_002321583.1	predicted protein [Populus trichocarpa]	2.0e-19	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2L9

Fln msg: your sequence is shorter than subject: 68 - 200

Fln protein: YPLIVMEDADIDEAVEIAHLAVFTNMGQICVAGSRVFVQESIYDEFVKKAVERAKKQVVGDPEGRSF*

Protein Length: 69

Fln nts: CGTACCCTCTCATTGTTATGGAGGACGCTGATATTGATGAAGCTGTGGAAATTGCCCATCTAGCAGTATTTACCAACATGGGGCAAATCTGCGTGGCAGGTTCACGGGTGTTTGTTCAAGAAAGCATTTATGATGAATTTGTGAAGAAAGCAGTGGAAAGAGCAAAGAAGCAAGTGGTCGGAGACCCAGAAGGCAGAAGCTTCTAA___TACCAGATACCTTATTACCCACAGAGAGAATCACACAATAGGCTTGGGGAGTTTGAACAGTTGGATCTCAAGGTTTCAGAATCCATTATACGATGGGCTTCGTGTACTCGGTTATCTGGGTGCACCTCATTTCAATCTCCATTAGTGTGTTGACAGCTTCTGCTAACATCATCAGTGTACCATTGGAAGCCAAAAGCATAGCTTCAAAAACCTAATGATTATCTTTTCTTTTGAAGGGCTGTTTGATGGAGCTTTAACCAGACTTTTGGCAGTCTGTTACTCCTGAGAATTA

Fln Alignment:

F51TW9002HHLRK___PLIVMEDADIDEAVEIAHLAVFTNMGQICVAGSRVFVQESIYDEFVKKAVERAKKQVVGDP
A9P2L9_______________PLIIMDDADVDKAVNIAHLAIYSNMGQVCLAGSRVFVQEGIYDEFVKKAVARAKQQVVGDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain