SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58212

Length: 357 nt

UniGene Fasta

>sp_v3.0_unigene58212
GTGTCCACTCCCAGACAAGCCACCCTTATCATGGCTGTTTTGGAGATTTTGTCACAGCATGCAAAGCACGAAGTATATTTGGGGCAAATTCATGGATCCACGCCAGATTGGGTCGATGATAGTGGAGTAGTGGAAGCATTCAATCGATTTTCATCAAGGTTAGTGCAACTGGAGAAGAATGTGATAGCCAAAAACAATGATCCCAATCTGAAGAACAGGCAAGGGCCTGCGCAAGTTCCATACACCTTACTGTATCTAATCCAACACCAGTGATTTATCCGAGTCTGGTGGCCTCAACGTTCACGGAGTCCCCAACAGCATTTCCATCTAATCCATCTAATGCAAATTTCAGTAGGT

Ace file of the UniGene sp_v3.0_unigene58212

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=B8LLK5_PICSI	-	-	9.80909e-45	92%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Lipoxygenase	-	-	2.469e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	2.871e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Linoleic acid metabolism	00591	2.871e-10	%
Sma3	alpha-Linolenic acid metabolism	00592	2.871e-10	%
Sma3	Biosynthesis of plant hormones	01070	2.871e-10	%
Sma3	Metabolic pathways	01100	2.871e-10	%

Source	Gene names
Sma3	LOX1.5; LOX4; vlxB;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G22400.1	LOX5 PLAT/LH2 domain-containing lipoxygenase family protein chr3:7927011-7931167 FORWARD LENGTH=886	4.0e-20	47%
RefSeq	Arabidopsis thaliana	NP_188879.2	lipoxygenase 5 [Arabidopsis thaliana]	5.0e-20	47%
RefSeq	Populus trichocarpa	XP_002315780.1	predicted protein [Populus trichocarpa]	1.0e-20	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: Separated hits, possible frame ERROR between 255 and 263, your sequence is shorter than subject: 111 - 930

Fln protein: VSTPRQATLIMAVLEILSQHAKHEVYLGQIHGSTPDWVDDSGVVEAFNRFSSRLVQLEKNVIAKNNDPNLKNRQGPAQVPYTLLxxxxNTSDLSESGGLNVHGVPNSISI*

Protein Length: 112

Fln nts: GTGTCCACTCCCAGACAAGCCACCCTTATCATGGCTGTTTTGGAGATTTTGTCACAGCATGCAAAGCACGAAGTATATTTGGGGCAAATTCATGGATCCACGCCAGATTGGGTCGATGATAGTGGAGTAGTGGAAGCATTCAATCGATTTTCATCAAGGTTAGTGCAACTGGAGAAGAATGTGATAGCCAAAAACAATGATCCCAATCTGAAGAACAGGCAAGGGCCTGCGCAAGTTCCATACACCTTACTGTAxxxxxxxxxCAACACCAGTGATTTATCCGAGTCTGGTGGCCTCAACGTTCACGGAGTCCCCAACAGCATTTCCATCTAATCCATCTAATGCAAATTTCAGTAGGT

Fln Alignment:

F51TW9002ING4T___VSTPRQATLIMAVLEILSQHAKHEVYLGQIHGSTPDWVDDSGVVEAFNRFSSRLVQLEKNVIAKNNDPNLKNRQGPAQVPYTLLYxxxNTSDLSESGGLNVHGVPNSISI
B8LLK5_______________VSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVDDSGVEEAFNRFSSRLVQLEKNVIDRNNNPNLKNRHGPAQVPYTLLYxxxNTSDLSESGGLIVQGVPNSISI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain