SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58200

Length: 459 nt

UniGene Fasta

>sp_v3.0_unigene58200
ATGGGGATCAAGGTTGCTTCTCTGTTTTGAGGACAGATTGCCTTAAGCTCTTGTCTTCTTGGGAGTTCTGTGAGAGCGATTTTTAATTTCTGTGTGTCTGGTAAGACGACCGGTGCGTCGCCCACTCAGAGCAAACCAGTTATCTCTTAGGTATCACAAATATTTCGTAAGAAGCATCAACAGGCTTAGCTAGTTCCCTTGTGTTCTACCGCATAACTCAAGATCAGATTTCTCTGGGTGTTTTGAGGCGTGGAAAAATGGGAAGAGGAAAGATCGAAATCAAGGCAATCGAGAATCCTACTAACAGACAAGTCACCTTTTCCAAGCGTAAAACAGGACTTCAGAAGAAGGCCCATGAGCTTTCAGTCTTGTGTAATGCCCAGGTTGCTCTAATCATCTTCTCTGCAGCTGGGAAAAAGTTTGAATATTCAAGTTCCAGCATGAGGGAAATAGTAGATA

Ace file of the UniGene sp_v3.0_unigene58200

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADS-box transcription factor SrMADS1 (Fragment) n=1 Tax=Selaginella remotifolia RepID=Q84UJ6_SELRE	-	-	2.0e-22	59%
FL-Next	tr=B-class MADS-box transcription factor; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	77%
Sma3	AGAMOUS-like protein	-	-	4.139e-23	-

Source	Gene names
Sma3	AG; AG-1; AG-2; AG1; AG1-T2; AG2; AGL; AGL1; AGL11; AGL15; AGL31; AGL35; AGL39; AGL5; AGL8; AGL9; AGa; AGb; AP1-2; AVAG1; AVAG2; ApMADS2; At2g42830; At3g58780; At4g09960; At4g18960; At5g13790; At5g51870; At5g60910; BnSHP1; CAG1; CAG2; CAG3; CAL; CMB; CUM1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	fruit development	GO:0010154	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	maintenance of floral organ identity	GO:0048497	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51870.3	AGL71 AGAMOUS-like 71 chr5:21085635-21087923 REVERSE LENGTH=219	2.0e-24	71%
RefSeq	Arabidopsis thaliana	NP_974924.1	protein agamous-like 71 [Arabidopsis thaliana]	1.0e-24	71%
RefSeq	Populus trichocarpa	XP_002325531.1	predicted protein [Populus trichocarpa]	7.0e-24	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B2ZX84

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 67 - 229

Fln protein: MGRGKIEIKAIENPTNRQVTFSKRKTGLQKKAHELSVLCNAQVALIIFSAAGKKFEYSSSSMREIVD

Protein Length: 68

Fln nts: ATGGGGATCAAGGTTGCTTCTCTGTTTTGAGGACAGATTGCCTTAAGCTCTTGTCTTCTTGGGAGTTCTGTGAGAGCGATTTTTAATTTCTGTGTGTCTGGTAAGACGACCGGTGCGTCGCCCACTCAGAGCAAACCAGTTATCTCTTAGGTATCACAAATATTTCGTAAGAAGCATCAACAGGCTTAGCTAGTTCCCTTGTGTTCTACCGCATAACTCAAGATCAGATTTCTCTGGGTGTTTTGAGGCGTGGAAAA_-_ATGGGAAGAGGAAAGATCGAAATCAAGGCAATCGAGAATCCTACTAACAGACAAGTCACCTTTTCCAAGCGTAAAACAGGACTTCAGAAGAAGGCCCATGAGCTTTCAGTCTTGTGTAATGCCCAGGTTGCTCTAATCATCTTCTCTGCAGCTGGGAAAAAGTTTGAATATTCAAGTTCCAGCATGAGGGAAATAGTAGATA

Fln Alignment:

F51TW9002FMHUH___MGRGKIEIKAIENPTNRQVTFSKRKTGLQKKAHELSVLCNAQVALIIFSAAGKKFEYSSSSMREIV
B2ZX84_______________MGRGKIEIKKIENITNRQVTFSKRKGGLRKKAHELSVLCDAEVALIVFSSTGKLVEYSSSSMKKVL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain