SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58097

Length: 290 nt

UniGene Fasta

>sp_v3.0_unigene58097
GTATCAGACCATGTTCGATAGCTTTTGGAGCAGATCAATTCGATTACACAAGCGAAAAGGGGAAGAGAAGTATACAGAGCTTCTTCAATTGGTACTACTTTTCATTCACCATAGCGATGATGGTGGCGCTGACGATCATAGTATACATTCAAGATGATGTAAGCTGGAGTTGGGGTTTGTGTATCCCCACCAGTCTGATGTTTCTTTCTGTCACGAGCTTCCTTGTGGGGGCAAATCTCTACAATTGTGTTACGCCAGAGGGAAGTTCATTCGCTAGCTTTGCACAAGTC

Ace file of the UniGene sp_v3.0_unigene58097

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nitrate transporter n=1 Tax=Citrus trifoliata RepID=E0X1U8_PONTR	-	-	2.0e-29	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Nitrate transporter, putative	-	-	3.176e-38	-

Source	Gene names
Sma3	AT5G62680; At1g18880; At1g69870; At3g47960; At5g28470; At5g62680; F6A14.2; GSVIVT00000074001; GSVIVT00000075001; GSVIVT00000076001; GSVIVT00016711001; GSVIVT00020876001; GSVIVT00023300001; GSVIVT00028975001; GSVIVT00030327001; GSVIVT00032446001; LOC_Os03g

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G28470.1	Major facilitator superfamily protein chr5:10429813-10432357 FORWARD LENGTH=559	5.0e-33	53%
RefSeq	Arabidopsis thaliana	NP_198199.2	major facilitator protein [Arabidopsis thaliana]	7.0e-33	53%
RefSeq	Populus trichocarpa	XP_002317993.1	predicted protein [Populus trichocarpa]	6.0e-35	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA65

Fln msg: Distance to subject end: 334 aas, your sequence is shorter than subject: 96 - 629

Fln protein: IRPCSIAFGADQFDYTSEKGKRSIQSFFNWYYFSFTIAMMVALTIIVYIQDDVSWSWGLCIPTSLMFLSVTSFLVGANLYNCVTPEGSSFASFAQV

Protein Length: 97

Fln nts: GTATCAGACCATGTTCGATAGCTTTTGGAGCAGATCAATTCGATTACACAAGCGAAAAGGGGAAGAGAAGTATACAGAGCTTCTTCAATTGGTACTACTTTTCATTCACCATAGCGATGATGGTGGCGCTGACGATCATAGTATACATTCAAGATGATGTAAGCTGGAGTTGGGGTTTGTGTATCCCCACCAGTCTGATGTTTCTTTCTGTCACGAGCTTCCTTGTGGGGGCAAATCTCTACAATTGTGTTACGCCAGAGGGAAGTTCATTCGCTAGCTTTGCACAAGTC

Fln Alignment:

F51TW9002G8Y19___IRPCSIAFGADQFDYTSEKGKRSIQSFFNWYYFSFTIAMMVALTIIVYIQDDVSWSWGLCIPTSLMFLSVTSFLVGANLYNCVTPEGSSFASFAQV
D5AA65_______________VRPSNMAFGADQLEQEGAKGKRRVQSFFNWYYFSSCVALIISLTVIVYIQTNVSWGIGFGICIVFMLISIVFFLLGRPVYRHDVPRGSAFTGFAQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain