SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58083

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene58083
TCCTCTTGCAGGCACTGAAGTCTGGAAGTTGGGTCTTGCTGGATGAACTAAATCTTGCTCCACAGTACTAGTAACTAAGAGGGATTGATGCGATCTTGGATCACCGTGGAGAAGTTTATGTTCCAGAGTTGGGACGCAGTTTTAGATGTCCACCCTCATTTC

Ace file of the UniGene sp_v3.0_unigene58083

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Midasin n=2 Tax=Oryza sativa Japonica Group RepID=Q109L5_ORYSJ	-	-	7.0e-15	73%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	73%

Source	Gene names
Sma3	CHLREDRAFT_169185; GSVIVT00034119001; LOC_Os10g31864; MICPUCDRAFT_21219; MICPUN_65101; OsI_33882; OsJ_31772; Ot01g04040; PHATRDRAFT_23838; PHYPADRAFT_33; POPTRDRAFT_782171; RCOM_0654710;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transcription factor binding	GO:0008134	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of protein complex assembly	GO:0043254	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-3	IPR011703	-	-
Sma3	ATPase, dynein-related, AAA domain	IPR011704	-	-
Sma3	Midasin	IPR012099	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67120.1	" ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding chr1:25069727-25095526 REVERSE LENGTH=5393"	2.0e-18	71%
RefSeq	Arabidopsis thaliana	NP_176883.5	AAA ATPase containing von Willebrand factor type A domain-containing protein [Arabidopsis thaliana]	2.0e-18	71%
RefSeq	Populus trichocarpa	XP_002327931.1	predicted protein [Populus trichocarpa]	9.0e-17	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1I4E9

Fln msg: Distance to subject end: 1994 aas, your sequence is shorter than subject: 53 - 3684

Fln protein: LLQALKSGSWVLLDELNLAPQY**LRGIDAILDHRGEVYVPELGRSFRCPPSF

Protein Length: 54

Fln nts: TCCTCTTGCAGGCACTGAAGTCTGGAAGTTGGGTCTTGCTGGATGAACTAAATCTTGCTCCACAGTACTAGTAACTAAGAGGGATTGATGCGATCTTGGATCACCGTGGAGAAGTTTATGTTCCAGAGTTGGGACGCAGTTTTAGATGTCCACCCTCATTTC

Fln Alignment:

F51TW9001BD5QA___LLQALKSGSWVLLDELNLAPQY**LRGIDAILDHRGEVYVPELGRSFRCPPSF
I1I4E9_______________LLKALKNGSWVLLDELNLAPQSV-LEGLNAILDHRAEVYIPELGQTYKCPPSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain