SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58040

Length: 461 nt

UniGene Fasta

>sp_v3.0_unigene58040
ATGGGAGAAGCACGCGAAGGGAAAAGTGATGGCAGCTCCTCGCAGGAGCGTGGATGGAAAAACGTGTTTAAGATGAAGCCTGGGCATATGACAACCATTCTTGTCCAGTTTTCTCTCTTGAACTCTCGGCATGGTTATCCGTTTAATGCAAGTGGGGAACCAGGCTATATGTATCACTGCCATATTCTTGATCATGAAGACAATGAGATGATGAGGCCTCTCAAAATTCGATCTTGAATTCCAACTCAGCCGCATGAGTGTATGGAATCAGAAAGCTTTGATTTTCATAACATTGTCCTTTCGTCAGGATGATCAATAATTACACGCTGGAATTTTATACAATTCTCATAAGGTGTTCTACAATTCTTATCATGAAGTGGAGCAATTATAAAACCGATAAAATTATGTGACCAGTATTCGTTCACTGTAATTTTCTCCTTCCATTAAGTTCAGTTGGACGG

Ace file of the UniGene sp_v3.0_unigene58040

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low-phosphate root 1 n=6 Tax=Arabidopsis RepID=A5X8Y8_ARATH	-	-	6.0e-22	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Putative spore coat protein	-	-	3.223e-08	-

Source	Gene names
Sma3	At1g23010/F19G10_5; At1g71040; At1g71040/F23N20.3; F19G10.5; F23N20.3; GSVIVT00030463001; GSVIVT00030465001; LPR1; Os01g0126100; OsI_00214; OsI_00218; OsJ_00214; OsJ_06565; P0037C04.37; P0044F08.18; P0409B08.2; POPTRDRAFT_769549; RCOM_1289060; VITISV_0282

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	viral capsid	GO:0019028	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Uncharacterised domain XH	IPR005379	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23010.1	LPR1 Cupredoxin superfamily protein chr1:8147353-8149580 FORWARD LENGTH=581	5.0e-27	64%
RefSeq	Arabidopsis thaliana	NP_173714.2	cupredoxin-like protein [Arabidopsis thaliana]	7.0e-27	64%
RefSeq	Populus trichocarpa	XP_002315892.1	predicted protein [Populus trichocarpa]	1.0e-24	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: your sequence is shorter than subject: 79 - 583

Fln protein: MGEAREGKSDGSSSQERGWKNVFKMKPGHMTTILVQFSLLNSRHGYPFNASGEPGYMYHCHILDHEDNEMMRPLKIRS*

Protein Length: 80

Fln nts: ATGGGAGAAGCACGCGAAGGGAAAAGTGATGGCAGCTCCTCGCAGGAGCGTGGATGGAAAAACGTGTTTAAGATGAAGCCTGGGCATATGACAACCATTCTTGTCCAGTTTTCTCTCTTGAACTCTCGGCATGGTTATCCGTTTAATGCAAGTGGGGAACCAGGCTATATGTATCACTGCCATATTCTTGATCATGAAGACAATGAGATGATGAGGCCTCTCAAAATTCGATCTTGA___ATTCCAACTCAGCCGCATGAGTGTATGGAATCAGAAAGCTTTGATTTTCATAACATTGTCCTTTCGTCAGGATGATCAATAATTACACGCTGGAATTTTATACAATTCTCATAAGGTGTTCTACAATTCTTATCATGAAGTGGAGCAATTATAAAACCGATAAAATTATGTGACCAGTATTCGTTCACTGTAATTTTCTCCTTCCATTAAGTTCAGTTGGACGG

Fln Alignment:

F51TW9001DQN95___EGKSDGSSSQERGWKNVFKMKPGHMTTILVQFSLLNSRHGYPFNASGEPGYMYHCHILDHEDNEMMRPLKIRS
B8LRY9_______________KGKVMAAPVQERGWKNVFKIQPGYITTILVQFSFLDSHQPYPFNASTEPGYVYHCHILDHEDNEMMRPLKIRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain