SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene58020

Length: 339 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene58020
CATTACAAAAGAGCAGTGATGGAGTTATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGATAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATAGAGGAATTGAATGCAAGAAAAGCTGAAAGTAGAAGTTCTGAGATTTCATCTGGAAAAGGGGATGACAGTATGCAAAAGCACATAGATATGGATGCAAACCAGAAGAATAATTCCTGTGAATTTGTGACCTTGGTAGAAAGTGTATTCTGCAGTGAATTATCTAGCACTATATGCTGCTGTGAGTGTGGACATTCTTCAG

Ace file of the UniGene sp_v3.0_unigene58020 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase 1 [Arabidopsis thaliana] sp\|Q9FPT5.2\|UBP1_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; AltName: Full=Deubiquitinating enzyme 1; Short=AtUBP1; AltName: Full=Ubiquitin thiolesterase 1; AltName: Full=Ubiq	-	-	7.0e-15	41%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	41%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002300170.1	predicted protein [Populus trichocarpa]	6.0e-20	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FPT5

Fln msg: Distance to subject end: 736 aas, your sequence is shorter than subject: 112 - 1083

Fln protein: LQKSSDGVIDPRTLFTAICDKVPRFRGYRQQDSHELLRFLLDCLHIEELNARKAESRSSEISSGKGDDSMQKHIDMDANQKNNSCEFVTLVESVFCSELSSTICCCECGHSS

Protein Length: 113

Fln nts: CATTACAAAAGAGCAGTGATGGAGTTATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGATAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATAGAGGAATTGAATGCAAGAAAAGCTGAAAGTAGAAGTTCTGAGATTTCATCTGGAAAAGGGGATGACAGTATGCAAAAGCACATAGATATGGATGCAAACCAGAAGAATAATTCCTGTGAATTTGTGACCTTGGTAGAAAGTGTATTCTGCAGTGAATTATCTAGCACTATATGCTGCTGTGAGTGTGGACATTCTTCAG

Fln Alignment:

F51TW9001D4XKO___IDPRTLFTAICDKVPRFRGYRQQDSHELLRFLLDCLHIEELNARKAESRSSEISSGKGDDSMQKHIDMDANQKNNSCEFVTLVESVFCSELSSTICCCECGHSS
Q9FPT5_______________INPRDLFFSVCSQAPQFRGYQQHDSHELLRCLLDGLSIEE-------------------SSLRKKLGVSDSNDSSTYQKPTLIDSVFGGEISSTVSCLECGHFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain