SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57981

Length: 407 nt

UniGene Fasta

>sp_v3.0_unigene57981
ATGGGGGTACATGCACTTCGTGGGAGACGTAGGGTCTGAAGAGCAAGGGTTGTGCAGATCTGAGAGTGCTGGGTAACATGACTTTGCTTTGATCCGTGGCAACCTATAGATCGACTCCAAGCTCAGACCGCGAGAGGATCTAAGCCCGTCAGTCGGGCGCGGAGTAGGCGGATTATTGGGTAGTTTAAGCCATGTCGACCCCTGCGAGGAAGAGGCTGATGAGGGATTTCAAGCGGCTGCAGCAGGATCCGCCGGCAGGCATCAGTGGGGCGCCTCAGGACAGTAATATTATGCTTTGGAATGCTGCCCGATGATACTCCTTGGGACGGAGGTACGTTTAAGTTGACTCTTCAGTTCACGGAGGACTATCCAAATAAGCCACCAACAGTACGTTTTGTTCTAGGATG

Ace file of the UniGene sp_v3.0_unigene57981

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein (Fragment) n=1 Tax=Vitis vinifera RepID=D7TND2_VITVI	-	-	8.0e-30	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Ubiquitin carrier protein	-	-	5.69e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	4.525e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		4.525e-14	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		4.525e-14	%

Source	Gene names
Sma3	At1g14400; At2g02760; At5g62540; CHLREDRAFT_132836; F14L17.17; F14L17_35; GSVIVT00000109001; GSVIVT00020897001; GSVIVT00027085001; GSVIVT00029008001; HUPB901; HUPB902; HUPB903; K19B1.15; LOC_Os03g57790; MICPUCDRAFT_27434; MICPUN_92203; Ntubc1; Ntubc2; OJ1

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	base-excision repair	GO:0006284	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	histone H2B ubiquitination	GO:0033523	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G02760.1	ATUBC2, UBC2 ubiquiting-conjugating enzyme 2 chr2:774271-775149 FORWARD LENGTH=152	4.0e-31	97%
RefSeq	Arabidopsis thaliana	NP_973825.1	ubiquitin-conjugating enzyme E2 1 [Arabidopsis thaliana]	5.0e-31	97%
RefSeq	Populus trichocarpa	XP_002325860.1	histone ubiquitination proteins group [Populus trichocarpa]	5.0e-32	97%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMK1

Fln msg: Separated hits, possible frame ERROR between 305 and 307, Distance to subject end: 76 aas, your sequence is shorter than subject: 72 - 152

Fln protein: MSTPARKRLMRDFKRLQQDPPAGISGAPQDSNIMLWNxxPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVLG

Protein Length: 73

Fln nts: ATGGGGGTACATGCACTTCGTGGGAGACGTAGGGTCTGAAGAGCAAGGGTTGTGCAGATCTGAGAGTGCTGGGTAACATGACTTTGCTTTGATCCGTGGCAACCTATAGATCGACTCCAAGCTCAGACCGCGAGAGGATCTAAGCCCGTCAGTCGGGCGCGGAGTAGGCGGATTATTGGGTAGTTTAAGCC_-_ATGTCGACCCCTGCGAGGAAGAGGCTGATGAGGGATTTCAAGCGGCTGCAGCAGGATCCGCCGGCAGGCATCAGTGGGGCGCCTCAGGACAGTAATATTATGCTTTGGAATGCxxxGCCCGATGATACTCCTTGGGACGGAGGTACGTTTAAGTTGACTCTTCAGTTCACGGAGGACTATCCAAATAAGCCACCAACAGTACGTTTTGTTCTAGGATG

Fln Alignment:

F51TW9001D6V5M___MSTPARKRLMRDFKRLQQDPPAGISGAPQDSNIMLWNAxPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV
A9NMK1_______________MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAxPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain