SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57979

Length: 450 nt

UniGene Fasta

>sp_v3.0_unigene57979
ATGGGACACTATTCTCGTCTTTGTATTCTGTGTTTTAGTCTCTGTTTGCATCAAACGAGTGGCATTGAAAAAATGGAGAGTTCAAGAAGACCAGAATCATCCCTCGCCATATTCAGCTGGCAGTGAGAAACGACGACGAGTTGGGGAAACTTTTGGGGAAGGTGACCATCGCCAGTGGCGGAGTGCTGCCAAACATTCATCAGGTTCTACTCCCCAAGAAGACCGCGGAGAAAAACGGAGAAGGCTTCTGCGCCAAAGTCCCCAAAGAAGTGAAAAATTCATCTTCCCTTGGCTTCTTTGAAAATGGTGTTTTATTAACACCACCTCTTCTTGTCGGAAAGATTTGGTTTGATCACTCGCTGGGCGTTTGTCGATTGTAGTTTAGGGCAAGGGTTTCATTGGTATTATTGAACTTGTAGGATATTAGGAGATTTTAGAAGAGATCATTTA

Ace file of the UniGene sp_v3.0_unigene57979

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI	-	-	3.0e-20	100%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Histone H2A	-	-	0.0	-

Source	Gene names
Sma3	6A06; A34; At1g08880; At1g51060; At1g54690; At3g20670; At4g27230; At5g02560; At5g27670; At5g54640; At5g59870; B1377B10.25; CHLREDRAFT_100147; CHLREDRAFT_100223; CHLREDRAFT_107113; CHLREDRAFT_109409; CHLREDRAFT_112398; CHLREDRAFT_112753; CHLREDRAFT_115469;

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2A	IPR002119	-	-
Sma3	BSD	IPR005607	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G54690.1	HTA3, H2AXB, G-H2AX, GAMMA-H2AX gamma histone variant H2AX chr1:20414607-20415206 REVERSE LENGTH=142	2.0e-21	75%
RefSeq	Arabidopsis thaliana	NP_172363.1	putative histone H2AXa [Arabidopsis thaliana]	2.0e-21	75%
RefSeq	Populus trichocarpa	XP_002328536.1	histone 2 [Populus trichocarpa]	5.0e-22	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP23

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 126 - 144

Fln protein: GTLFSSLYSVF*SLFASNEWH*KNGEFKKTRIIPRHIQLAVRNDDELGKLLGKVTIASGGVLPNIHQVLLPKKTAEKNGEGFCAKVPKEVKNSSSLGFFENGVLLTPPLLVGKIWFDHSLGVCRL*

Protein Length: 127

Fln nts: ATGGGACACTATTCTCGTCTTTGTATTCTGTGTTTTAGTCTCTGTTTGCATCAAACGAGTGGCATTGAAAAAATGGAGAGTTCAAGAAGACCAGAATCATCCCTCGCCATATTCAGCTGGCAGTGAGAAACGACGACGAGTTGGGGAAACTTTTGGGGAAGGTGACCATCGCCAGTGGCGGAGTGCTGCCAAACATTCATCAGGTTCTACTCCCCAAGAAGACCGCGGAGAAAAACGGAGAAGGCTTCTGCGCCAAAGTCCCCAAAGAAGTGAAAAATTCATCTTCCCTTGGCTTCTTTGAAAATGGTGTTTTATTAACACCACCTCTTCTTGTCGGAAAGATTTGGTTTGATCACTCGCTGGGCGTTTGTCGATTGTAG___TTTAGGGCAAGGGTTTCATTGGTATTATTGAACTTGTAGGATATTAGGAGATTTTAGAAGAGATCATTTA

Fln Alignment:

F51TW9001D7B54___KKTRIIPRHIQLAVRNDDELGKLLGKVTIASGGVLPNIHQVLLPKKTAEKNGEGFCAKVPK
B8LP23_______________KKTRIIPRHIQLAVRNDDELGKLLGKVTIASGGVLPNIHQVLLPKKTAEKAEKGSAPKSPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain