SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57915

Length: 342 nt

UniGene Fasta

>sp_v3.0_unigene57915
TAGTAGACATGTATGCAAAATGCAAGAGTATAGAAAATGCACGCCGAGTGTTTGACAAAATATCCCCAAAAGATGTGATCTCATGGATTACAATGATTGCAGGTTACCGCCAGAATAGATATTGCCAAGCGGCACTTAAACTCTTTAGGGAAATGCAGTTCTCTGTGAAACCCAATTCGGTTGCTATCATTTCTATTCTCTCTACATGCGCCGATTTAGACGCTTTGCAACAGGGAAGGGAAATCCACGGTTACATAATTAGAAATGGGCTGTCATCAGATGTTTTTGTAGGGAAGGCGCTCATTGGCATGTATGCTAAATGTGGGAATATGAAAGATGCAC

Ace file of the UniGene sp_v3.0_unigene57915

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAU3_RICCO	-	-	2.0e-24	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	8.274e-09	-

Source	Gene names
Sma3	At3g23330; At4g18750; F28A21.160; GSVIVT00016277001; GSVIVT00021045001; GSVIVT00024231001; GSVIVT00028983001; GSVIVT00030081001; GSVIVT00035842001; MLM24.6; OJ1268_B08.11; Os05g0574800; OsI_21088; OsJ_19638; PCMP-H32; PCMP-H45; POPTRDRAFT_555652; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23330.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:8347200-8349347 FORWARD LENGTH=715	4.0e-30	47%
RefSeq	Arabidopsis thaliana	NP_188975.3	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-30	47%
RefSeq	Populus trichocarpa	XP_002305733.1	predicted protein [Populus trichocarpa]	2.0e-29	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 113 - 394

Fln protein: VDMYAKCKSIENARRVFDKISPKDVISWITMIAGYRQNRYCQAALKLFREMQFSVKPNSVAIISILSTCADLDALQQGREIHGYIIRNGLSSDVFVGKALIGMYAKCGNMKDA

Protein Length: 114

Fln nts: TAGTAGACATGTATGCAAAATGCAAGAGTATAGAAAATGCACGCCGAGTGTTTGACAAAATATCCCCAAAAGATGTGATCTCATGGATTACAATGATTGCAGGTTACCGCCAGAATAGATATTGCCAAGCGGCACTTAAACTCTTTAGGGAAATGCAGTTCTCTGTGAAACCCAATTCGGTTGCTATCATTTCTATTCTCTCTACATGCGCCGATTTAGACGCTTTGCAACAGGGAAGGGAAATCCACGGTTACATAATTAGAAATGGGCTGTCATCAGATGTTTTTGTAGGGAAGGCGCTCATTGGCATGTATGCTAAATGTGGGAATATGAAAGATGCAC

Fln Alignment:

F5X2MQL01DJIC6___VDMYAKCKSIENARRVFDKISPKDVISWITMIAGYRQNRYCQAALKLFREMQFS-VKPNSVAIISILSTCADLDALQQGREIHGYIIRNGLSSDVFVGKALIGMYAKCGNMKDA
B8LKN6_______________INMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain