SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57845

Length: 406 nt

UniGene Fasta

>sp_v3.0_unigene57845
CGTTGCCTACTTACCAGACTATGCTTAACACTTTGGATGGTGTAAGGGATGAGACTGGTGCCAGTCCCACATCCTGGGCAACGTGGACACGTATGTGGACAGCTGAGGAAAATAGACATGGTGATCTTCTTAATAAATATCTTTACTTGTGTGGCCGAGTGGACATGAAACNGATTGAAAAAACCNTACATTATCTGATTGGGTCTGGAATGGAGAGAGCAACATTCATATCGCATGGTAACACTGCAAGATTTGCTAAAGGATTTGGCGATCTGAAATTGGCCCAAATATGTGGAATTATTGCTGCAGACGAGAAGCGCCATGAGACTGCATATACCAAGNTCGTGGAAAAGCTGTTTGAGATTGATCCTGACACTACAATGTTAGCTTTCGAAGATATGATGAC

Ace file of the UniGene sp_v3.0_unigene57845

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-[acyl-carrier-protein] desaturase n=1 Tax=Picea sitchensis RepID=A9NVD4_PICSI	-	-	82%
FL-Next	sp=Acyl-[acyl-carrier-protein] desaturase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Acyl-[acyl-carrier protein] desaturase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acyl-[acyl-carrier-protein] desaturase.	EC:1.14.19.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		0.0	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		0.0	%

Source	Gene names
Sma3	ACPD; At1g43800; At2g43710; At3g02610; At3g02620; At3g02630; At5g16230; At5g16240; B1793G04.1; Bn4; CHLREDRAFT_205753; DES7; F16B3.25; F28H19.7; FAB2; GSVIVT00005265001; GSVIVT00012872001; GSVIVT00014296001; GSVIVT00034667001; GSVIVT00034668001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	acyl-[acyl-carrier-protein] desaturase activity	GO:0045300	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Fatty acid desaturase, type 2	IPR005067	-	-
Sma3	Stearoyl-ACP desaturase, conserved site	IPR005803	-	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43710.2	-	76%
RefSeq	Arabidopsis thaliana	NP_850400.1	acyl-[acyl-carrier-protein] desaturase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002330700.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVD4

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 134 - 412

Fln protein: LPTYQTMLNTLDGVRDETGASPTSWATWTRMWTAEENRHGDLLNKYLYLCGRVDMKQIEKTLHYLIGSGMERATFISHGNTARFAKGFGDLKLAQICGIIAADEKRHETAYTKFVEKLFEIDPDTTMLAFEDMM

Protein Length: 135

Fln nts: CGTTGCCTACTTACCAGACTATGCTTAACACTTTGGATGGTGTAAGGGATGAGACTGGTGCCAGTCCCACATCCTGGGCAACGTGGACACGTATGTGGACAGCTGAGGAAAATAGACATGGTGATCTTCTTAATAAATATCTTTACTTGTGTGGCCGAGTGGACATGAAACaGATTGAAAAAACCcTACATTATCTGATTGGGTCTGGAATGGAGAGAGCAACATTCATATCGCATGGTAACACTGCAAGATTTGCTAAAGGATTTGGCGATCTGAAATTGGCCCAAATATGTGGAATTATTGCTGCAGACGAGAAGCGCCATGAGACTGCATATACCAAGtTCGTGGAAAAGCTGTTTGAGATTGATCCTGACACTACAATGTTAGCTTTCGAAGATATGATGAC

Fln Alignment:

F5X2MQL01DJ1H1___LPTYQTMLNTLDGVRDETGASPTSWATWTRMWTAEENRHGDLLNKYLYLCGRVDMKQIEKTLHYLIGSGM------------------ERATFISHGNTARFAKGFGDLKLAQICGIIAADEKRHETAYTKFVEKLFEIDPDTTMLAFEDMM
A9NVD4_______________LPTYQTMLNTLDGVRDETGASPTSWATWTRMWTAEENRHGDLLNKYLYLCGRVDMRQIEKTIQYLVGFGMDPRTENSPYLGFLYTSFQERATFISHGNTARFAKGCGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDTTMLAFEDMM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain