SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57839

Length: 199 nt

UniGene Fasta

>sp_v3.0_unigene57839
ATGGGGAGAGATGAAGAGTTGTTTTCGATGGTGGGGGGCGAAGGATCGGTGGATCTGGTAACGGTGGCCACGGCAGTCCACTGGTTCGACCTCGAGACCTTTTACTCTCAAGTTAAACGCCTCCTGCGCAAACCNGGGGGTNTGATTGCTGTGTGGACTTATGCGAATCTCAGCGTCAGCCCCGNTGTGGATGCAGTTT

Ace file of the UniGene sp_v3.0_unigene57839

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SA12_RICCO	-	-	3.0e-17	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Embryo-abundant protein EMB-like	-	-	2.399e-09	-

Source	Gene names
Sma3	AT4g22530; At2g41380; At4g22530; At5g10830; EMB34; GSVIVT00017389001; GSVIVT00017391001; Os01g0589200; OsI_02636; OsI_02641; OsJ_02414; P0415C01.10; PHYPADRAFT_204276; POPTRDRAFT_654673; POPTRDRAFT_800939; RCOM_0181880; T30N20_100; VITISV_039110; VITISV_0

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-
Sma3	Methyltransferase type 12	IPR013217	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G10830.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr5:3423731-3424649 FORWARD LENGTH=261	2.0e-22	65%
RefSeq	Arabidopsis thaliana	NP_196644.1	S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]	2.0e-22	65%
RefSeq	Populus trichocarpa	XP_002306269.1	predicted protein [Populus trichocarpa]	1.0e-22	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ97

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 66 - 263

Fln protein: MGRDEELFSMVGGEGSVDLVTVATAVHWFDLETFYSQVKRLLRKPGGLIAVWTYANLSVSPVVDAV

Protein Length: 67

Fln nts: ATGGGGAGAGATGAAGAGTTGTTTTCGATGGTGGGGGGCGAAGGATCGGTGGATCTGGTAACGGTGGCCACGGCAGTCCACTGGTTCGACCTCGAGACCTTTTACTCTCAAGTTAAACGCCTCCTGCGCAAACCaGGGGGTcTGATTGCTGTGTGGACTTATGCGAATCTCAGCGTCAGCCCCGtTGTGGATGCAGTTT

Fln Alignment:

F5X2MQL01B2YYT___DEELFSMVGGEGSVDLVTVATAVHWFDLETFYSQVKRLLRKPGGLIAVWTYANLSVSPVVD
A9NZ97_______________DEELTSIVGEGGSVDLVTVATAVHWFDLETFYSQVKRVLRKPGGVIAVWSYVSSSISSAVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain