SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57616

Length: 221 nt

UniGene Fasta

>sp_v3.0_unigene57616
ATGGATGCCAAAGGAATAAAAATGAAAATATTATGTCACTTGGATTACTTCATCCTTTAAATATCCCAAATCAGAAATGTGAGGAAATATCAAAGGACTTTATCGAAGGTTTACTTGTCTCTGATGGTAAGGATAAAATTCTTGTAGTAGTCGACAGACTCACCAAGTATGCCCACTTGATTGGAATGAGGAAATTAGATTCAAGAAAACAAATCGTTGAA

Ace file of the UniGene sp_v3.0_unigene57616

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBa0070D17.9 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XLT9_ORYSJ	-	-	7.0e-13	58%
FL-Next	tr=OSJNBa0070D17.9 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	58%

Source	Gene names
Sma3	LOC_Os03g47840; OSJNBa0070D17.9; OSJNBb0070O09.8; VITISV_026680;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q7XLT9

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 73 - 394

Fln protein: GCQRNKNENIMSLGLLHPLNIPNQKCEEISKDFIEGLLVSDGKDKILVVVDRLTKYAHLIGMRKLDSRKQIVE

Protein Length: 74

Fln nts: ATGGATGCCAAAGGAATAAAAATGAAAATATTATGTCACTTGGATTACTTCATCCTTTAAATATCCCAAATCAGAAATGTGAGGAAATATCAAAGGACTTTATCGAAGGTTTACTTGTCTCTGATGGTAAGGATAAAATTCTTGTAGTAGTCGACAGACTCACCAAGTATGCCCACTTGATTGGAATGAGGAAATTAGATTCAAGAAAACAAATCGTTGAA

Fln Alignment:

F5X2MQL01D0KYR___CQRNKNENIMSLGLLHPLNIPNQKCEEISKDFIEGLLVSDGKDKILVVVDRLTKYAHLIGMRKLDSRKQIVE
Q7XLT9_______________CQVTKSENIHIPSLLNPLEIPDMAWTHISMDFIEGLPKSHGKDVILVVVDRLTKYAHFVAMSHPYSVEQVVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain