SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57608

Length: 208 nt

UniGene Fasta

>sp_v3.0_unigene57608
ATGGGAAGTGCAAAAGTTCAATGTGTTATCCAAACACTGTTATGCTACAGGGATACGAACCCTTTAAGGTGTATTATCTTTGCTAGAAGAGTCATAGCATCCATGGTAATGGTAAACTTATTGCGCTCTATGAATTGCTTTGCGAGCATTAAGTCAGAATATATGGCTGGAAATGGGTCATCGTTACAAGCTCAAACTCAAAAGGAAC

Ace file of the UniGene sp_v3.0_unigene57608

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR	-	-	2.0e-09	49%
FL-Next	sp=Endoribonuclease Dicer homolog 2a; Oryza sativa subsp. japonica (Rice).	-	-	0.0	43%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315119.1	dicer-like protein [Populus trichocarpa]	2.0e-13	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q10HL3

Fln msg: Distance to subject end: 965 aas, your sequence is shorter than subject: 69 - 1410

Fln protein: MGSAKVQCVIQTLLCYRDTNPLRCIIFARRVIASMVMVNLLRSMNCFASIKSEYMAGNGSSLQAQTQKE

Protein Length: 70

Fln nts: ATGGGAAGTGCAAAAGTTCAATGTGTTATCCAAACACTGTTATGCTACAGGGATACGAACCCTTTAAGGTGTATTATCTTTGCTAGAAGAGTCATAGCATCCATGGTAATGGTAAACTTATTGCGCTCTATGAATTGCTTTGCGAGCATTAAGTCAGAATATATGGCTGGAAATGGGTCATCGTTACAAGCTCAAACTCAAAAGGAAC

Fln Alignment:

F5X2MQL01ENF8H___KVQCVIQTLLCYRDTNPLRCIIFARRVIASMVMVNLLRSMNCFASIKSEYMAGNGSSLQAQTQK
Q10HL3_______________KVHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSGWNVKHMAGSRPGLLSQSRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain