SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57559

Length: 328 nt

UniGene Fasta

>sp_v3.0_unigene57559
TCGAGATGGAGAGCGCGCTGAATTTGCTGGCAGAGTGGCTGTACGAGTCGTGTGGCACAGTCTCATTCTCGTGCGTGGAGCATCCCAAGTTCAAGTCTTTTCTTACCCAGGTAGGTCTTCCTCCCATAAGTAGAAAGTATATTGCTGGAGCAAAGTTGGATGCAAAATATGAAGAAGTGAGGAACGAGTCTGATGCAAAGCTGAGAGATGCAATGTTCCTCCAGCTGGCATCCGATGGTTGGAAGAAGAAGAGTGCTGGCTGTTCACCCTGTGGTGAAAATCTGGTGAACTTGACTCTCAATCTACCCAATGGAACAAGCCTGTTCAG

Ace file of the UniGene sp_v3.0_unigene57559

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	74%

Source	Gene names
Sma3	At1g62870; F16P17.2; GSVIVT00000532001; GSVIVT00010314001; GSVIVT00038466001; OSIGBa0107A02.7; OSJNBa0013A04.12; OSJNBa0055I13.10; Os02g0450000; Os04g0261400; OsI_07065; OsI_15108; OsJ_06582; OsJ_14061; PHYPADRAFT_134347; PHYPADRAFT_187430; PHYPADRAFT_194

Source	InterPros	Term	Type	e value	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12380.1	" unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (sour	1.0e-35	56%
RefSeq	Arabidopsis thaliana	NP_172700.1	uncharacterized protein [Arabidopsis thaliana]	1.0e-35	56%
RefSeq	Populus trichocarpa	XP_002304439.1	predicted protein, partial [Populus trichocarpa]	4.00001e-41	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SS37

Fln msg: Distance to subject end: 446 aas, your sequence is shorter than subject: 108 - 733

Fln protein: EMESALNLLAEWLYESCGTVSFSCVEHPKFKSFLTQVGLPPISRKYIAGAKLDAKYEEVRNESDAKLRDAMFLQLASDGWKKKSAGCSPCGENLVNLTLNLPNGTSLF

Protein Length: 109

Fln nts: TCGAGATGGAGAGCGCGCTGAATTTGCTGGCAGAGTGGCTGTACGAGTCGTGTGGCACAGTCTCATTCTCGTGCGTGGAGCATCCCAAGTTCAAGTCTTTTCTTACCCAGGTAGGTCTTCCTCCCATAAGTAGAAAGTATATTGCTGGAGCAAAGTTGGATGCAAAATATGAAGAAGTGAGGAACGAGTCTGATGCAAAGCTGAGAGATGCAATGTTCCTCCAGCTGGCATCCGATGGTTGGAAGAAGAAGAGTGCTGGCTGTTCACCCTGTGGTGAAAATCTGGTGAACTTGACTCTCAATCTACCCAATGGAACAAGCCTGTTCAG

Fln Alignment:

F5X2MQL01AOHXL___EMESALNLLAEWLYESCGTVSFSCVEHPKFKSFLTQVGLPPISRKYIAGAKLDAKYEEVRNESDAKLRDAMFLQLASDGWKKKSAGCSPCGENLVNLTLNLPNGTSLF
A9SS37_______________QAEAALNLLAEWLYESCGTVSFSCVEHPKFKAFLSQLGLPPVSRRYLAGAKLDAKFEEVKQDSELKLREAMFFQLSSDGWKKKSIG---MGESLINITLNLPNGSTLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain