SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57553

Length: 316 nt

UniGene Fasta

>sp_v3.0_unigene57553
ATGGGGGTTGTAGCAAGAGAAGAGCTTGCTGCTGCTGCAGGTGTTGCTGAGAATAGAAATGGTGTTGTTTCAGAAGAGACTGCAAGTATGTTTGATCTTAATACTGTTAGCAGCACCGTTCAGAGTATTTAGCAGTCCACACCATGACTACAGAGATGCTTTGTCCAAAAGTATTTTGTTCTTTGAGGGCCAGAGATCAGGAAAACTGCCTGCAAATCAGCGCATCAAATGGAGAAAAGACTCTGCTCTCAGAGATGGTTCAGCCGCAAATGTTGACTTGGTAGGAGGATATTATGATGCAGGAGACAATGTGAAG

Ace file of the UniGene sp_v3.0_unigene57553

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endo-beta-1,4-glucanase n=3 Tax=Solanaceae RepID=Q93WZ0_TOBAC	-	-	2.0e-24	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Endo-1,4-beta-glucanase	-	-	4.574e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cellulase.	EC:3.2.1.4	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	6J23.18; Al-cel1; At1g02800; At1g22880; At1g23210; At1g48930; At1g64390; At1g70710; At1g71380; At2g32990; At2g44550; At2g44560; At2g44570; At3g43860; At4g02290; At4g09740; At4g11050; At4g23560; At4g38990; At4g39000; At4g39010; B1011A07.26; B1339H09.3; CEL

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-
Sma3	cell wall modification involved in multidimensional cell growth	GO:0042547	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G70710.1	ATGH9B1, CEL1, GH9B1 glycosyl hydrolase 9B1 chr1:26659356-26662962 REVERSE LENGTH=492	1.0e-29	71%
RefSeq	Arabidopsis thaliana	NP_177228.1	endoglucanase 8 [Arabidopsis thaliana]	1.0e-29	71%
RefSeq	Populus trichocarpa	XP_002321834.1	predicted protein [Populus trichocarpa]	8.0e-29	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUH0

Fln msg: Distance to subject end: 407 aas, your sequence is shorter than subject: 86 - 514

Fln protein: MVLFQKRLQVCLILILLAAPFRVFSSPHHDYRDALSKSILFFEGQRSGKLPANQRIKWRKDSALRDGSAANVDLVGGYYDAGDNVK

Protein Length: 87

Fln nts: ATGGGGGTTGTAGCAAGAGAAGAGCTTGCTGCTGCTGCAGGTGTTGCTGAGAATAGAA_-_ATGGTGTTGTTTCAGAAGAGACTGCAAGTATGTTTGATCTTAATACTGTTAGCAGCACCGTTCAGAGTATTTAGCAGTCCACACCATGACTACAGAGATGCTTTGTCCAAAAGTATTTTGTTCTTTGAGGGCCAGAGATCAGGAAAACTGCCTGCAAATCAGCGCATCAAATGGAGAAAAGACTCTGCTCTCAGAGATGGTTCAGCCGCAAATGTTGACTTGGTAGGAGGATATTATGATGCAGGAGACAATGTGAAG

Fln Alignment:

F5X2MQL01D8ZXP___AAPFRVFSSPH-----------HDYRDALSKSILFFEGQRSGKLPANQRIKWRKDSALRDGSAANVDLVGGYYDAGDNVK
A9NUH0_______________ATPFRKFL-PHALYGRRGPSLSHDYRDALTKSILFYEGQRSGKLPLNQRMRWRADSALSDGAAEHVDLTGGYYDAGDNVK

SSRs (tot: 1)

Start position	End position	Sequence	Length
27	38	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain