SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57419

Length: 391 nt

UniGene Fasta

>sp_v3.0_unigene57419
ATGGGGATACATTGAAGAGCGTTTCAACCATCATGGCAAAAACCAGCTACTCTTTGGCAACAATATTACTCATCATAATTCCGCTGGTGCAGGTTTATGCAGACGTCGCCATTACCACCAGCCAGAATGATATAGAGAACCACGGGACAAATAATGAAAAATTCAGTCCACGGCCCCATATTGATTGTGTTTCTCTGTGCAAGCATAGATGTTCCAAGGCATCGGAGGCCCAAGATCTGTACGAAGGGCTGTGAAATATGCTGTGCAAAATGCAAATGCGTACCTTATGGGAGCATTAAAGATGCGTGTCCCTGCTATAGCAATTGGAAAACTACCGGTGGCAAACACAAATGCCCTGATCATTGAAATTTTGCTTTTACTATATTATATA

Ace file of the UniGene sp_v3.0_unigene57419

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02704, GASA, Gibberellin regulated protein	-	-	6.0e-19	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G74670.1	Gibberellin-regulated family protein chr1:28053378-28053893 FORWARD LENGTH=101	6.0e-12	56%
RefSeq	Arabidopsis thaliana	NP_177605.2	putative gibberellin-regulated protein [Arabidopsis thaliana]	8.0e-12	56%
RefSeq	Populus trichocarpa	XP_002327240.1	predicted protein [Populus trichocarpa]	9.0e-14	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH2

Fln msg: Separated hits, possible frame ERROR between 224 and 226, No stop codon before M and low homology subject,

Fln protein: MAKTSYSLATILLIIIPLVQVYADVAITTSQNDIENHGTNNEKFSPRPHIDCVSLCKHRCSKAxxRPKICTKGCEICCAKCKCVPYGSIKDACPCYSNWKTTGGKHKCPDH*

Protein Length: 113

Fln nts: ATGGGGATACATTGAAGAGCGTTTCAACCATC_-_ATGGCAAAAACCAGCTACTCTTTGGCAACAATATTACTCATCATAATTCCGCTGGTGCAGGTTTATGCAGACGTCGCCATTACCACCAGCCAGAATGATATAGAGAACCACGGGACAAATAATGAAAAATTCAGTCCACGGCCCCATATTGATTGTGTTTCTCTGTGCAAGCATAGATGTTCCAAGGCATCxxxGAGGCCCAAGATCTGTACGAAGGGCTGTGAAATATGCTGTGCAAAATGCAAATGCGTACCTTATGGGAGCATTAAAGATGCGTGTCCCTGCTATAGCAATTGGAAAACTACCGGTGGCAAACACAAATGCCCTGATCATTGA___AATTTTGCTTTTACTATATTATATA

Fln Alignment:

F5X2MQL01E3PRO___MAKTSYSLATILLIIIPLVQVY---ADVAITTSQNDIENHGTNNEKFSPRPHIDCVSLCKHRCSKASxRPKICTKGCEICCAKCKCVPYGSI--KDACPCYSNWKTTGGKHKCP
A9NKH2_______________MASASRLFVLYFVMMVFVVQMYLEAADVGASTAAG-LQTNGMNRSLLQT---IDCNAACGQRCKEASxRHKVCLRACGTCCAKCNCVPPGTSGNKDVCPCYASLKTHGNKPKCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain