SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57405

Length: 407 nt

UniGene Fasta

>sp_v3.0_unigene57405
CATCCAGGTGTCTAGCGATGATGCGGTTGCAATGGCACGACGTCTCGCTCTAGAGGAGGGCCTTTTGGTGGGCATCTCCTGCGGAGCAGCAGTGGTTGCATCCAATAGGGTTGCGCGGCGGCCGGAGAACAAGGGCAAGCTTGTCTGCACCGTCCTGCCCAGCTTTGGCGAACGGTATCTGTCCACCGTCCTCTTCCAGAACATCCGAGACGAGGCTGAGAAGATGACCTTCCAGTGATCAGGCTGTGGATATCAAGCATGCCAGGGGCTTGAAGCAAAAGAATGACAAGAGATGGGGAGCTACATGCAAAGCCACAATTGCGGCCTGCTGCACAAATCTTGTTCTTGTTCCTTTGCAGTGGCCCTGTCTGCCTAGGTTTGCATTGCAGGTTATCGATGGAGCCAGT

Ace file of the UniGene sp_v3.0_unigene57405

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine synthase n=3 Tax=Chlamydomonas reinhardtii RepID=A8ISA9_CHLRE	-	-	3.0e-21	67%
FL-Next	sp=Cysteine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Cysteine synthase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cysteine synthase.	EC:2.5.1.47	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cysteine and methionine metabolism	00270		0.0	%
Sma3	Sulfur metabolism	00920		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Beta-pyrazolylalanine synthase.	EC:2.5.1.51	-	6.897e-25	-
Sma3	Transferred entry: 2.5.1.47.	EC:4.2.99.8	-	7.66e-09	-

Source	Gene names
Sma3	ACS 1; AT3G59760; AT5G28020; At2g43750; At3g03630; At3g04940; At3g59760; At3g61440; At4g14880; At5g28020; At5g28030; AtcysC1; AtcysD1; AtcysD2; Bsas1; CAS; CHLREDRAFT_175651; CHLREDRAFT_189320; CHLREDRAFT_196886; CSase A; CSase B; CSase C; CSase LP; CSase

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chromoplast	GO:0009509	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	cysteine synthase activity	GO:0004124	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	beta-pyrazolylalanine synthase activity	GO:0047458	Molecular Function	-
Sma3	L-3-cyanoalanine synthase activity	GO:0050017	Molecular Function	-
Sma3	L-mimosine synthase activity	GO:0050461	Molecular Function	-
Sma3	cysteine biosynthetic process from serine	GO:0006535	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cyanide metabolic process	GO:0019499	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	detoxification of nitrogen compound	GO:0051410	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Glucoamylase	IPR000165	-	-
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3		IPR017909	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G14880.1	OASA1, OLD3, CYTACS1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1 chr4:8518209-8520050 REVERSE LENGTH=322	6.0e-22	65%
RefSeq	Arabidopsis thaliana	NP_001190733.1	cysteine synthase [Arabidopsis thaliana]	8.0e-22	65%
RefSeq	Populus trichocarpa	XP_002320141.1	predicted protein, partial [Populus trichocarpa]	2.0e-22	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRJ4

Fln msg: your sequence is shorter than subject: 79 - 325

Fln protein: IQVSSDDAVAMARRLALEEGLLVGISCGAAVVASNRVARRPENKGKLVCTVLPSFGERYLSTVLFQNIRDEAEKMTFQ*

Protein Length: 80

Fln nts: CATCCAGGTGTCTAGCGATGATGCGGTTGCAATGGCACGACGTCTCGCTCTAGAGGAGGGCCTTTTGGTGGGCATCTCCTGCGGAGCAGCAGTGGTTGCATCCAATAGGGTTGCGCGGCGGCCGGAGAACAAGGGCAAGCTTGTCTGCACCGTCCTGCCCAGCTTTGGCGAACGGTATCTGTCCACCGTCCTCTTCCAGAACATCCGAGACGAGGCTGAGAAGATGACCTTCCAGTGA___TCAGGCTGTGGATATCAAGCATGCCAGGGGCTTGAAGCAAAAGAATGACAAGAGATGGGGAGCTACATGCAAAGCCACAATTGCGGCCTGCTGCACAAATCTTGTTCTTGTTCCTTTGCAGTGGCCCTGTCTGCCTAGGTTTGCATTGCAGGTTATCGATGGAGCCAGT

Fln Alignment:

F5X2MQL01DC6BF___IQVSSDDAVAMARRLALEEGLLVGISCGXXXXXXXXXXXXPENKGKLVCTVLPSFGERYLSTVLFQNIRDEAEKMTFQ
A9NRJ4_______________IQISSDESVDMAKQLALKEGLLVGISSGAATAAAIRVAKRPENAGKLIVVILPSFGERYLSSVLFQSIKLEAENMVFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain