SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene57348

Length: 139 nt

UniGene Fasta

>sp_v3.0_unigene57348
TTTCGAATCTGACATTCCTTGTACAGATTGATCTTTCAAACAATGATCTGATCGGACCCATTCCTTCCAGGGGTCAGCTCAGCACTCTCCCGGCATCTCAATACGCAAATAATCCCAGGCCTCTGTGATGTTCCACTCG

Ace file of the UniGene sp_v3.0_unigene57348

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase BRI1-like 2 n=5 Tax=Brassicaceae RepID=BRL2_ARATH	-	-	3.0e-11	86%
FL-Next	sp=Serine/threonine-protein kinase BRI1-like 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	86%

Source	Gene names
Sma3	AT2G01950; At2g01950; BRL1; F14H20.2; GSVIVT00030658001; LOC_Os10g02500; LRR-RLK; OJ1014H12.3; OSJNBa0092N12.12; Os10g0114400; OsI_32557; OsJ_34509; POPTRDRAFT_657034; POPTRDRAFT_658669; RCOM_0777790; VH1; VITISV_033419;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	phloem transport	GO:0010233	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01950.1	VH1, BRL2 BRI1-like 2 chr2:440805-444236 REVERSE LENGTH=1143	6.0e-16	86%
RefSeq	Arabidopsis thaliana	NP_178304.1	serine/threonine-protein kinase BRI1-like 2 [Arabidopsis thaliana]	8.0e-16	86%
RefSeq	Populus trichocarpa	XP_002312487.1	predicted protein [Populus trichocarpa]	9.0e-15	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZPS9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 418 aas, your sequence is shorter than subject: 42 - 1143

Fln protein: SNLTFLVQIDLSNNDLIGPIPSRGQLSTLPASQYANNPRPL*

Protein Length: 43

Fln nts: TTTCGAATCTGACATTCCTTGTACAGATTGATCTTTCAAACAATGATCTGATCGGACCCATTCCTTCCAGGGGTCAGCTCAGCACTCTCCCGGCATCTCAATACGCAAATAATCCCAGGCCTCTGTGATGTTCCACTCG

Fln Alignment:

F5V9AAZ02GSBI3___SNLTFLVQIDLSNNDLIGPIPSRGQLSTLPASQYANNP
Q9ZPS9_______________SNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain